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Sample GSM8813 Query DataSets for GSM8813
Status Public on Aug 04, 2003
Title UV-B b,pl-Cy3-CA b,pl-Cy5
Sample type RNA
 
Channel 1
Source name corn adult leaf b,pl in the greenhouse after 8h UV-B supplementation-Cy3
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name corn adult leaf b,pl under CA plastic-Cy5
Organism Zea mays
Extracted molecule total RNA
 
 
Description For a description of the experiment, see
Paula Casati and Virginia Walbot, Plant Physiology (August 2003)

Gene Expression Profiling in Response to Ultraviolet Radiation in Maize Genotypes with Varying Flavonoid Content.
 
Submission date Aug 02, 2003
Last update date May 27, 2005
Contact name Paula Casati
E-mail(s) casati@cefobi-conicet.gov.ar
Phone 54-341-4371955
Organization name Universidad Nacional de Rosario
Department Biological Sciences
Lab Casati
Street address Suipacha 531
City Rosario
State/province Santa Fe
ZIP/Postal code 2000
Country Argentina
 
Platform ID GPL372
Series (1)
GSE573 UV Radiation gene profiling in Maize Genotypes with Varying Flavonoid Content

Data table header descriptions
ID_REF
RATIO ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
VALUE log 2 ratio of intensities (CH1I-CH1B)/(CH2I-CH2B)
CH1I uncorrected mean pixel intensity for channel 1 (Cy3)
CH1B median background pixel intensity for channel 1 (Cy3)
CH1AB mean background pixel intensity for channel 1 (Cy3)
CH2I uncorrected mean pixel intensity for channel 2 (Cy5)
CH2B median background pixel intensity for channel 2 (Cy5)
CH2AB mean background pixel intensity for channel 2 (Cy5)
SPIX number of pixels in a spot
BGPIX uniform background in the two channels
EDGE
RAT2
MRAT median of (Ch2PI-CH2B)/(Ch1PI-CH1B)
REGR slope estimate by simple linear regression
CORR correlation between channel1 and channel 2 pixels within the spot
LFRAT slope estimate by least-squares fit
CH1GTB1 fraction of pixels in the spot greater than background (CH1B)
CH2GTB1 fraction of pixels in the spot greater than background (CH2B)
CH1GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH1B)
CH2GTB2 fraction of pixels in the spot greater than 1.5 times the background (CH2B)
CH1EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH1)
CH2EDGEA mean magnitude of the horizontal and vertical Sobel edge vectors contained within each spot (CH2)
FLAG user defined spot flag
CH1KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH1KSP actual probability derived from CH1KSD
CH2KSD value of the Komogorov-Smirnov statistic that assesses the likelihood that the spot pixel intensity distribution is drawn from the background distribution
CH2KSP actual probability derived from CH2KSD

Data table
ID_REF RATIO VALUE CH1I CH1B CH1AB CH2I CH2B CH2AB SPIX BGPIX EDGE RAT2 MRAT REGR CORR LFRAT CH1GTB1 CH2GTB1 CH1GTB2 CH2GTB2 CH1EDGEA CH2EDGEA FLAG CH1KSD CH1KSP CH2KSD CH2KSP
1 0.388136713 -1.365363195 13329 3926 4089 24494 268 458 156 1278 0 2.576 2.468 2.48 0.9644 2.642 0.9231 0.9744 0.7244 0.9231 0.2215 0.4024 0 0.7795 0.00E+00 0.8552 0.00E+00
2 0.380252472 -1.394970469 12677 4062 4124 22925 269 590 156 1127 0 2.63 2.509 2.54 0.9621 2.718 0.9423 0.9295 0.75 0.8462 0.1996 0.3637 0 0.7785 0.00E+00 0.7746 0.00E+00
3 0.384348907 -1.379511527 12273 3619 3694 22778 262 465 156 1130 0 2.602 2.566 2.203 0.9379 2.458 0.9167 0.9872 0.6346 0.9487 0.2901 0.4499 0 0.7165 0.00E+00 0.8899 0.00E+00
4 -0.626829268 2374 2631 2780 662 252 267 156 1136 0 0 0.42 -0.1502 -0.3113 5.297 0.25 0.8333 0 0.6154 0.06498 0.2003 2 0.3752 1.45E-17 0.5631 4.86E-39
5 0.896969697 -0.156868849 2520 2076 2319 749 254 263 156 1141 0 1.115 0.8381 0.0394 0.06194 0.0659 0.7692 0.8846 0.1346 0.641 0.0931 0.2223 0 0.2925 7.57E-11 0.5762 7.08E-41
6 1.494444444 0.579609266 2906 2099 2270 801 261 266 156 1141 0 0.6691 0.5621 0.092 0.4345 0.09545 0.641 0.8013 0.1538 0.6731 0.1459 0.2397 0 0.2436 1.18E-07 0.6369 0.00E+00
7 30.55806452 4.933481264 11535 2062 2104 572 262 267 156 1113 0 0.03272 0.03432 0.03406 0.9262 0.03406 0.9872 0.7885 0.6923 0.5449 0.2753 0.1987 0 0.765 0.00E+00 0.4764 5.33E-28
8 32.13017751 5.005857046 12844 1984 1995 601 263 271 156 1134 0 0.03112 0.032 0.03142 0.9161 0.03143 0.9744 0.8333 0.75 0.6667 0.3167 0.2093 0 0.8212 0.00E+00 0.6197 0.00E+00
9 30.22608696 4.917722316 12351 1923 1955 611 266 278 156 1147 0 0.03308 0.03403 0.03274 0.9395 0.03275 0.9744 0.8077 0.7051 0.5769 0.3026 0.2078 0 0.7732 0.00E+00 0.5115 2.49E-32
10 0.761666667 -0.392768335 3766 1938 1993 2672 272 315 156 1111 0 1.313 1.333 1.295 0.9217 1.444 0.9872 0.9679 0.8269 0.9103 0.1148 0.2858 0 0.8541 0.00E+00 0.8328 0.00E+00
11 0.912580768 -0.131975845 4409 2008 2033 2905 274 312 156 1083 0 1.096 1.301 0.5521 0.6887 0.7275 0.9808 0.9423 0.8205 0.8654 0.1521 0.2336 0 0.8642 0.00E+00 0.8001 0.00E+00
12 0.714596161 -0.484799932 3949 1976 1991 3039 278 289 156 1083 0 1.399 1.386 1.361 0.9339 1.494 1 0.9808 0.8718 0.9359 0.1118 0.262 0 0.9173 0.00E+00 0.9037 0.00E+00
13 0.891350531 -0.1659352 10652 1841 1900 10177 292 332 156 1111 0 1.122 1.125 1.112 0.9833 1.133 1 0.9808 0.8397 0.9295 0.2443 0.3184 0 0.8306 0.00E+00 0.8549 0.00E+00
14 0.913779483 -0.130082044 9741 1644 1729 9148 287 342 156 1111 0 1.094 1.071 1.115 0.9807 1.14 0.9744 0.9679 0.7821 0.8654 0.2848 0.3889 0 0.7482 0.00E+00 0.7375 0.00E+00
15 0.893932634 -0.161761979 9384 1369 1405 9241 275 314 156 1139 0 1.119 1.13 1.132 0.9868 1.149 1 0.9359 0.8013 0.8269 0.2729 0.3648 0 0.7813 0.00E+00 0.7542 0.00E+00
16 0.677822959 -0.561019591 3354 1187 1220 3471 274 293 156 1139 0 1.475 1.438 1.587 0.977 1.642 0.9872 0.9231 0.7372 0.7692 0.1793 0.3291 0 0.7597 0.00E+00 0.6969 0.00E+00
17 0.668971738 -0.579982833 3477 1252 1248 3591 265 275 156 1111 0 1.495 1.459 1.512 0.9716 1.576 0.9231 0.9231 0.6603 0.75 0.2044 0.3499 0 0.6664 0.00E+00 0.7037 0.00E+00
18 0.604976672 -0.725048582 3681 1347 1328 4125 267 284 156 1111 0 1.653 1.63 1.663 0.9767 1.723 0.9487 0.9872 0.7308 0.8526 0.1739 0.3241 0 0.7342 0.00E+00 0.7702 0.00E+00
19 2.100458615 1.070704361 11028 1410 1486 4861 282 322 156 1111 0 0.4761 0.469 0.4683 0.9755 0.4726 1 0.9615 0.891 0.9167 0.2872 0.3266 0 0.8772 0.00E+00 0.8502 0.00E+00
20 2.103975535 1.073117929 10320 1376 1468 4525 274 325 156 1149 0 0.4753 0.474 0.4635 0.9732 0.4681 1 0.9038 0.8397 0.8269 0.2538 0.3041 0 0.825 0.00E+00 0.7877 0.00E+00

Total number of rows: 16200

Table truncated, full table size 2737 Kbytes.




Supplementary data files not provided
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