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Sample GSM88913 Query DataSets for GSM88913
Status Public on Oct 23, 2006
Title E. coli K12 BW25113 w/t biofilm after 7 hr of culturing
Sample type RNA
 
Source name E. coli biofilm
Organism Escherichia coli
Characteristics RNA extracted from biofilm cells of E. coli K12 wild type after 7 hours of growth in LB
Extracted molecule total RNA
Extraction protocol RNA extracted from biofilm cells of E. coli K12 wild type after 7 hours of growth in LB
Label biotin
Label protocol Affimetrix Protocol
 
Hybridization protocol Affimetrix Protocol
Scan protocol Affimetrix Protocol
Description RNA extracted from biofilm cells of E. coli K12 wild type after 7 hours of growth in LB
Data processing MAS 5.0 Expression Analysis Default Settings
 
Submission date Dec 21, 2005
Last update date Oct 23, 2006
Contact name Thomas K. Wood
E-mail(s) Thomas.Wood@chemail.tamu.edu
Phone 979-862-1588
Fax 979-845-6884
URL http://cheweb.tamu.edu/orgs/groups/Wood/
Organization name Texas A & M University
Department Artie McFerrin Department of Chemical Engineering
Street address 220 Jack E. Brown Building
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL199
Series (1)
GSE3905 Temporal Biofilm Expression of E. coli K-12 after 4, 7, 15, and 24 hr

Data table header descriptions
ID_REF
B4 Stat Pairs Number of perfect match probes for the probeset
B4 Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF B4 Stat Pairs B4 Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2 2 503.5 A 0.125
AFFX-BioC-3_at 1 1 97.4 A 0.25
AFFX-CreX-5_at 20 20 11 A 0.645547
AFFX-CreX-3_at 20 20 11.1 A 0.997444
AFFX-DapX-5_at 20 20 55623.9 P 0.000044
AFFX-DapX-M_at 20 20 53877.4 P 0.000044
AFFX-DapX-3_at 20 20 43480.9 P 0.000044
AFFX-LysX-5_at 20 20 5796.2 P 0.000044
AFFX-LysX-M_at 20 20 5876.8 P 0.000044
AFFX-LysX-3_at 20 20 4719.1 P 0.000044
AFFX-PheX-5_at 20 20 15002 P 0.000044
AFFX-PheX-M_at 20 20 11307.4 P 0.000044
AFFX-PheX-3_at 20 20 7142.2 P 0.000044
AFFX-ThrX-5_at 20 20 29044 P 0.000044
AFFX-ThrX-M_at 20 20 25573.4 P 0.000044
AFFX-ThrX-3_at 20 20 22407 P 0.000044
AFFX-TrpnX-5_at 20 20 15.6 A 0.41138
AFFX-TrpnX-M_at 20 20 61.7 A 0.185131
AFFX-TrpnX-3_at 20 20 8.3 A 0.794268
AFFX-HXB2_5_at 20 20 4.6 A 0.868639

Total number of rows: 7312

Table truncated, full table size 303 Kbytes.




Supplementary data files not provided

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