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Sample GSM88916 Query DataSets for GSM88916
Status Public on Oct 23, 2006
Title E. coli K12 BW25113 w/t suspension after 4 hr of culturing
Sample type RNA
 
Source name E. coli suspension
Organism Escherichia coli
Characteristics RNA extracted from suspenion cells of E. coli K12 wild type after 4 hours of growth in LB
Extracted molecule total RNA
Extraction protocol RNA extracted from suspenion cells of E. coli K12 wild type after 4 hours of growth in LB
Label biotin
Label protocol Affimetrix Protocol
 
Hybridization protocol Affimetrix Protocol
Scan protocol Affimetrix Protocol
Description RNA extracted from suspenion cells of E. coli K12 wild type after 4 hours of growth in LB
Data processing MAS 5.0 Expression Analysis Default Settings
 
Submission date Dec 21, 2005
Last update date Oct 23, 2006
Contact name Thomas K. Wood
E-mail(s) Thomas.Wood@chemail.tamu.edu
Phone 979-862-1588
Fax 979-845-6884
URL http://cheweb.tamu.edu/orgs/groups/Wood/
Organization name Texas A & M University
Department Artie McFerrin Department of Chemical Engineering
Street address 220 Jack E. Brown Building
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL199
Series (1)
GSE3905 Temporal Biofilm Expression of E. coli K-12 after 4, 7, 15, and 24 hr

Data table header descriptions
ID_REF
B4 Stat Pairs Number of perfect match probes for the probeset
B4 Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF B4 Stat Pairs B4 Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2 2 843.3 A 0.125
AFFX-BioC-3_at 1 1 226.9 A 0.25
AFFX-CreX-5_at 20 20 10.2 A 0.645547
AFFX-CreX-3_at 20 20 9.5 A 0.981719
AFFX-DapX-5_at 20 20 6366 P 0.000044
AFFX-DapX-M_at 20 20 4653.4 P 0.00007
AFFX-DapX-3_at 20 20 4099.4 P 0.000044
AFFX-LysX-5_at 20 20 510 P 0.000044
AFFX-LysX-M_at 20 20 532.3 P 0.000044
AFFX-LysX-3_at 20 20 528.7 P 0.000044
AFFX-PheX-5_at 20 20 1738.4 P 0.00007
AFFX-PheX-M_at 20 20 1347.5 P 0.00007
AFFX-PheX-3_at 20 20 533 P 0.000081
AFFX-ThrX-5_at 20 20 2455.6 P 0.000044
AFFX-ThrX-M_at 20 20 1645.3 P 0.000044
AFFX-ThrX-3_at 20 20 2433.7 P 0.00006
AFFX-TrpnX-5_at 20 20 3681.8 P 0.000052
AFFX-TrpnX-M_at 20 20 2861.3 P 0.000044
AFFX-TrpnX-3_at 20 20 3567.7 P 0.000052
AFFX-HXB2_5_at 20 20 7.3 A 0.672921

Total number of rows: 7312

Table truncated, full table size 303 Kbytes.




Supplementary data files not provided

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