NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM89486 Query DataSets for GSM89486
Status Public on Apr 01, 2006
Title BW25113 w/t LB glu 24hr biofilm cells (2nd set)
Sample type RNA
 
Source name Channel 1
Organism Escherichia coli
Characteristics RNA extracted from biofilm cells of E. coli K12 wild type after 24 hours of growth in LB glu (2nd set)
Extracted molecule total RNA
Label biotin
 
Description RNA extracted from biofilm cells of E. coli K12 wild type after 24 hours of growth in LB glu (2nd set)
Data processing MAS 5.0 Expression Analysis Default Settings
 
Submission date Dec 26, 2005
Last update date Feb 17, 2006
Contact name Thomas K. Wood
E-mail(s) Thomas.Wood@chemail.tamu.edu
Phone 979-862-1588
Fax 979-845-6884
URL http://cheweb.tamu.edu/orgs/groups/Wood/
Organization name Texas A & M University
Department Artie McFerrin Department of Chemical Engineering
Street address 220 Jack E. Brown Building
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL199
Series (1)
GSE3937 E. coli K-12 yliH and yceP biofilm expression relative to wild type

Data table header descriptions
ID_REF
BW LB glu Stat Pairs Number of perfect match probes for the probeset
BW LB glu Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF BW LB glu Stat Pairs BW LB glu Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2 2 573.5 A 0.125
AFFX-BioC-3_at 1 1 504.1 A 0.25
AFFX-CreX-5_at 20 20 6 A 0.617401
AFFX-CreX-3_at 20 20 9.8 A 0.995516
AFFX-DapX-5_at 20 20 8120.7 P 0.000044
AFFX-DapX-M_at 20 20 7138.6 P 0.000052
AFFX-DapX-3_at 20 20 4842.8 P 0.000044
AFFX-LysX-5_at 20 20 687.6 P 0.000044
AFFX-LysX-M_at 20 20 476.3 P 0.000044
AFFX-LysX-3_at 20 20 656.8 P 0.000044
AFFX-PheX-5_at 20 20 1671.7 P 0.000052
AFFX-PheX-M_at 20 20 795 P 0.001796
AFFX-PheX-3_at 20 20 775 P 0.000446
AFFX-ThrX-5_at 20 20 3079.7 P 0.000044
AFFX-ThrX-M_at 20 20 2451.1 P 0.000052
AFFX-ThrX-3_at 20 20 2749.5 P 0.000052
AFFX-TrpnX-5_at 20 20 4 A 0.953518
AFFX-TrpnX-M_at 20 20 9.3 A 0.945787
AFFX-TrpnX-3_at 20 20 3.8 A 0.981719
AFFX-HXB2_5_at 20 20 2.3 A 0.978098

Total number of rows: 7312

Table truncated, full table size 302 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap