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Sample GSM903076 Query DataSets for GSM903076
Status Public on Sep 01, 2012
Title A673 4756083018_R008_C008
Sample type genomic
 
Source name EWS Cell Line
Organism Homo sapiens
Characteristics sample group: A673
cell line: A673
Growth protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit, then bisulfite treated with EZ DNA Methyation-Gold kit according to standard instructions
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4756083018_R008_C008
Bisulfite Treated DNA
Data processing BeadStudio software v3.2
 
Submission date Mar 27, 2012
Last update date Sep 01, 2012
Contact name Scott Borinstein
E-mail(s) scott.c.borinstein@vanderbilt.edu
Organization name Vanderbilt University
Street address 2200 Pierce Ave
City Nashville
ZIP/Postal code TN
Country USA
 
Platform ID GPL9183
Series (2)
GSE36857 Goldengate Methylation analysis: Ewing Sarcoma
GSE36859 Ewing Sarcoma

Data table header descriptions
ID_REF
VALUE Average Beta
4756083018_R008_C008.Signal CY3
4756083018_R008_C008.Signal CY5
4756083018_R008_C008.Detection Pval

Data table
ID_REF VALUE 4756083018_R008_C008.Signal CY3 4756083018_R008_C008.Signal CY5 4756083018_R008_C008.Detection Pval
AATK_E63_R 0.9392433 1189.51 19934.66 3.68E-38
AATK_P519_R 0.9844723 465.7599 35869.79 3.68E-38
AATK_P709_R 0.9586424 225.3603 7541.64 3.68E-38
ABCA1_E120_R 0.017416 5317.525 96.02396 3.68E-38
ABCA1_P45_F 0.01870186 2908.981 57.34601 3.68E-38
ABCB4_E429_F 0.8442504 326.9875 2314.513 3.68E-38
ABCB4_P51_F 0.9649296 302.9203 11085.98 3.68E-38
ABCB4_P892_F 0.1409223 2523.466 430.351 3.68E-38
ABCC2_E16_R 0.992673 41.81671 19213.42 3.68E-38
ABCC2_P88_F 0.9933804 26.26179 18947.77 3.68E-38
ABCC5_P444_F 0.02947293 8886.846 272.9122 3.68E-38
ABCG2_P178_R 0.1528643 12203.41 2220.131 3.68E-38
ABCG2_P310_R 0.9838555 58.65894 9668.813 3.68E-38
ABL1_P53_F 0.06593893 4275.106 308.8554 3.68E-38
ABL2_P459_R 0.1711073 4057.947 858.3201 3.68E-38
ABO_E110_F 0.05141432 4968.546 274.7204 3.68E-38
ABO_P312_F 0.08273204 2653.481 248.3474 3.68E-38
ACTG2_E98_R 0.9325249 24.17035 1716.068 3.68E-38
ACTG2_P346_F 0.9142042 1114.499 12941.19 3.68E-38
ACTG2_P455_R 0.9931142 -22.58032 14422.71 3.68E-38

Total number of rows: 1505

Table truncated, full table size 72 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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