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Sample GSM903214 Query DataSets for GSM903214
Status Public on Sep 01, 2012
Title HMSC-DP 4756083018_R005_C008
Sample type genomic
 
Source name hMSC Primary Culture
Organism Homo sapiens
Characteristics sample group: HMSC-DP
cell type: mesenchymal stem cell
Growth protocol genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit, then bisulfite treated with EZ DNA Methyation-Gold kit according to standard instructions
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 4756083018_R005_C008
Bisulfite Treated DNA
Data processing BeadStudio software v3.2
 
Submission date Mar 27, 2012
Last update date Sep 01, 2012
Contact name Scott Borinstein
E-mail(s) scott.c.borinstein@vanderbilt.edu
Organization name Vanderbilt University
Street address 2200 Pierce Ave
City Nashville
ZIP/Postal code TN
Country USA
 
Platform ID GPL9183
Series (2)
GSE36857 Goldengate Methylation analysis: Ewing Sarcoma
GSE36859 Ewing Sarcoma

Data table header descriptions
ID_REF
VALUE Average Beta
4756083018_R005_C008.Signal CY3
4756083018_R005_C008.Signal CY5
4756083018_R005_C008.Detection Pval

Data table
ID_REF VALUE 4756083018_R005_C008.Signal CY3 4756083018_R005_C008.Signal CY5 4756083018_R005_C008.Detection Pval
AATK_E63_R 0.9474672 1086.369 21397.03 3.68E-38
AATK_P519_R 0.7748259 3639.823 12868.76 3.68E-38
AATK_P709_R 0.4935609 2577.27 2609.191 3.68E-38
ABCA1_E120_R 0.02273688 4740.363 112.6153 3.68E-38
ABCA1_P45_F 0.02139729 2686.96 60.93728 3.68E-38
ABCB4_E429_F 0.9886675 -26.63321 8724.188 3.68E-38
ABCB4_P51_F 0.9887199 102.7936 17775.18 3.68E-38
ABCB4_P892_F 0.9558059 612.3011 15405.26 3.68E-38
ABCC2_E16_R 0.9946859 16.96123 21892.55 3.68E-38
ABCC2_P88_F 0.9930548 36.63916 19537.29 3.68E-38
ABCC5_P444_F 0.04144122 6341.514 278.485 3.68E-38
ABCG2_P178_R 0.2279028 10841.96 3229.78 3.68E-38
ABCG2_P310_R 0 4707.074 -36.81853 3.68E-38
ABL1_P53_F 0.05304241 2613.395 151.9868 3.68E-38
ABL2_P459_R 0.1306368 4161.751 640.4017 3.68E-38
ABO_E110_F 0.05030908 4255.124 230.709 3.68E-38
ABO_P312_F 0.02533553 2567.923 69.35025 3.68E-38
ACTG2_E98_R 0.9744135 -41.33081 3808.314 3.68E-38
ACTG2_P346_F 0.9481729 801.5599 16493.98 3.68E-38
ACTG2_P455_R 0.9944018 -35.155 17762.87 3.68E-38

Total number of rows: 1505

Table truncated, full table size 72 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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