|
| Status |
Public on Jul 04, 2012 |
| Title |
Ler-0 infected replicate 7 sample 19 |
| Sample type |
RNA |
| |
|
| Source name |
infected
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype: Ler-0
tissue: whole organism
infection: Tobacco etch potyvirus
|
| Treatment protocol |
Plants infected with TEV strain previosly adapted to A.thaliana ssp. Ler and non-infected plants as a control
|
| Growth protocol |
plants were mantained in a BSL-2 greenhouse at 16:8h light:dark and 24:20 day:night temperature until sample collection on 21 days post infection.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Quiagen, RNasyPlant Mini kit manufacturer protocol
|
| Label |
Cy3
|
| Label protocol |
standard Agilent protocol
|
| |
|
| Hybridization protocol |
standard Agilent protocol
|
| Scan protocol |
standard Agilent protocol
|
| Data processing |
Babelomics 4.2 (http://babelomics.bioinfo.cipf.es)
Series supplementary file contains Limma normalized signal intensity
|
| |
|
| Submission date |
Apr 13, 2012 |
| Last update date |
Jul 05, 2012 |
| Contact name |
Julia Hillung |
| E-mail(s) |
juhil1@ibmcp.upv.es
|
| Organization name |
CSIC-UPV
|
| Department |
IBMCP
|
| Lab |
Hillung
|
| Street address |
Ingeniero Fausto Elio s/n
|
| City |
Valencia |
| State/province |
Valencia |
| ZIP/Postal code |
46022 |
| Country |
Spain |
| |
|
| Platform ID |
GPL9020 |
| Series (1) |
| GSE37269 |
Transcript profiling of different Arabidopsis thaliana ecotypes in response to Tobacco etch potyvirus infection |
|
