GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM93887
Query DataSets for GSM93887
Status
Public on Aug 29, 2006
Title
Myotubes_rep1, chip HG-U133A
Sample type
RNA
Source name
myotubes
Organism
Homo sapiens
Characteristics
Fetal skeletal myoblasts
Growth protocol
Cultured in SKGM-2 media
Extracted molecule
nuclear RNA
Extraction protocol
RNA prep method: RNeasy
Label
Biotin
Scan protocol
GeneArray 2500 scanner
Description
The goal is to study the genome-wide mapping of histone modifications in differentiating human primary myoblasts.
Data processing
MicroArray Suite 5.0
Submission date
Jan 26, 2006
Last update date
Aug 29, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Platform ID
GPL96
Series (2)
GSE4131
Determination of myotube and myoblast expression levels
GSE4133
The Genome Wide Distribution of Acetylated Histone H4 Remodelled through Human Primary Myoblast Differentiation
Data table header descriptions
ID_REF
VALUE
signal intensity
ABS_CALL
present or absent call
DETECTION P-VALUE
p-value for absent/present
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
5278.3
P
0.000340
AFFX-BioB-M_at
10919.1
P
0.000044
AFFX-BioB-3_at
6774.2
P
0.000052
AFFX-BioC-5_at
13749.5
P
0.000060
AFFX-BioC-3_at
9264.2
P
0.000052
AFFX-BioDn-5_at
10525.8
P
0.000044
AFFX-BioDn-3_at
53551.0
P
0.000044
AFFX-CreX-5_at
124411.6
P
0.000044
AFFX-CreX-3_at
173594.2
P
0.000044
AFFX-DapX-5_at
21972.3
P
0.000044
AFFX-DapX-M_at
153476.3
P
0.000044
AFFX-DapX-3_at
191342.8
P
0.000044
AFFX-LysX-5_at
18863.5
P
0.000044
AFFX-LysX-M_at
95508.9
P
0.000044
AFFX-LysX-3_at
168150.4
P
0.000044
AFFX-PheX-5_at
6557.5
P
0.000044
AFFX-PheX-M_at
13848.3
P
0.000044
AFFX-PheX-3_at
84517.1
P
0.000044
AFFX-ThrX-5_at
1662.1
P
0.000390
AFFX-ThrX-M_at
3599.2
P
0.000060
Total number of rows:
22283
Table truncated, full table size
612 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM93887.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
GSM93887.EXP.gz
507 b
(ftp)
(http)
EXP
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
External link. Please review our
privacy policy
.