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Sample GSM947 Query DataSets for GSM947
Status Public on Feb 12, 2002
Title SWI4 3xHA IP with anti-HA, unsynchronized cells
Sample type RNA
 
Channel 1
Source name amplified genomic DNA
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name SWI4 3xHA IP with anti-HA, unsynchronized cells
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i21swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL50
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 76 45 4964 4682 4639 75 43 37 3952 3989 .94 0 -.329 .94 100 100 1.07 1.256 .935 .796 .898 515 80 83 94 145 156 -.329
2 59 45 78 112 75 59 37 32 64 95 .71 0 -.288 .9 27 17 1.04 1.221 .962 .819 1.038 637 120 81 94 162 175 -.288
3 63 40 2916 3383 3348 56 35 30 2852 2882 .93 0 -.032 1.076 95 98 .871 1.022 1.148 .978 1.108 495 120 83 95 181 193 -.032
4 56 41 78 117 79 54 38 32 67 100 .77 0 -.213 1.038 19 22 .987 1.159 1.013 .863 .782 609 120 81 94 197 210 -.213
5 58 46 151 353 303 63 50 43 258 301 .83 0 .774 2.046 92 100 .498 .585 2.007 1.71 1.451 385 80 84 94 217 227 .774
6 84 62 1194 1152 1087 94 65 55 926 981 .95 0 -.367 .909 95 96 1.098 1.289 .91 .776 .843 568 120 81 94 232 245 -.367
7 66 47 1027 924 878 70 46 39 748 787 .94 0 -.457 .848 100 99 1.17 1.373 .855 .728 .812 481 120 81 94 249 262 -.457
8 59 49 5671 9788 9743 69 45 38 8301 8339 .96 0 .55 1.735 99 99 .582 .683 1.718 1.464 1.715 598 156 80 95 265 280 .55
9 55 50 35 62 46 39 -9 30 .87 1 0 0 2.48 630 156 79 94 282 297
10 68 53 38 67 49 42 -9 32 .29 1.182 0 0 .262 619 156 79 94 299 314
11 72 53 1 50 1 70 49 42 1 43 .84 -.231 1 0 0 1 1.174 1 .852 .885 596 156 79 94 316 331 -.231
12 55 48 1 46 2 49 44 37 2 39 .64 .769 1.162 5 12 .5 .587 2 1.704 .412 575 156 79 94 334 349 .769
13 51 44 5 50 9 46 41 35 8 43 .38 .617 .957 5 13 .556 .652 1.8 1.534 .402 596 156 78 93 351 366 .617
14 53 45 1 43 4 54 39 33 3 37 .29 1.769 .857 1 0 .25 .293 4 3.408 .301 620 156 78 93 368 383 1.769
15 54 47 40 54 40 34 0 34 .35 .944 2 0 .323 637 156 78 93 385 400
16 53 48 8 54 10 47 44 37 9 46 .24 .091 .828 19 21 .8 .939 1.25 1.065 .226 609 156 78 93 403 418 .091
17 53 48 7 52 8 51 44 37 7 44 .23 -.038 .753 17 8 .875 1.027 1.143 .974 .231 624 156 78 93 420 435 -.038
18 55 50 11 60 16 52 44 37 14 51 .33 .309 .98 16 13 .688 .807 1.455 1.239 .343 625 156 78 93 437 452 .309
19 59 53 6 54 3 55 51 43 3 46 .26 -1.231 1 14 16 2 2.348 .5 .426 .234 633 156 77 92 454 469 -1.231
20 64 57 53 69 53 45 0 45 .28 1 5 0 .278 655 156 77 92 471 486

Total number of rows: 7680

Table truncated, full table size 919 Kbytes.




Supplementary data files not provided
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