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Sample GSM952 Query DataSets for GSM952
Status Public on Feb 12, 2002
Title SWI4 IP with anti-Swi4, unsynchronized cells (#30)
Sample type RNA
 
Channel 1
Source name swi4 deletion
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name WT
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i15swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL50
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 128 108 8364 8456 8367 108 89 139 13073 13212 .96 0 .644 .964 100 100 1 .64 1 1.563 .998 651 120 41 54 127 140 .644
2 117 100 81 158 79 98 79 123 123 246 .87 0 .603 .952 13 14 1.025 .659 .975 1.519 .884 841 208 40 56 143 159 .603
3 109 99 4018 3381 3299 93 82 128 5154 5282 .97 0 .359 .807 98 98 1.218 .78 .821 1.283 .827 354 80 43 54 162 173 .359
4 104 92 95 144 72 85 72 112 113 225 .87 0 .25 .82 24 23 1.319 .841 .758 1.189 .698 948 208 40 56 177 193 .25
5 98 82 437 357 298 68 59 92 465 557 .82 0 .09 .667 100 100 1.466 .94 .682 1.064 .895 283 52 44 53 198 207 .09
6 95 83 1224 1056 999 72 57 89 1561 1650 .95 0 .351 .797 88 88 1.225 .784 .816 1.275 .787 909 208 40 56 212 228 .351
7 88 82 1539 1426 1370 64 56 87 2141 2228 .96 0 .476 .891 100 99 1.123 .719 .89 1.391 .838 396 120 43 55 232 244 .476
8 83 79 11530 14634 14580 63 54 84 22781 22865 .98 0 .982 1.252 100 100 .791 .506 1.265 1.976 1.3 545 156 42 57 247 262 .982
9 94 83 3 69 10 71 59 92 15 107 .47 2.322 .713 3 4 .3 .2 3.333 5 .594 715 208 41 57 265 281 2.322
10 98 87 9 77 17 74 60 93 27 120 .55 1.585 .812 6 7 .529 .333 1.889 3 .631 690 208 41 57 282 298 1.585
11 99 86 19 72 11 72 61 95 17 112 .74 -.16 .702 4 5 1.727 1.118 .579 .895 .471 642 208 41 57 299 315 -.16
12 100 87 68 8 73 60 93 13 106 .56 .94 0 2 .691 690 208 41 57 316 332
13 99 87 4 65 2 72 63 98 3 101 .37 -.415 .78 8 8 2 1.333 .5 .75 .316 721 208 41 57 334 350 -.415
14 116 94 84 16 88 68 106 25 131 .38 .7 1 3 .775 694 208 41 57 351 367
15 118 99 67 89 68 106 104 .53 .763 2 1 .452 690 208 41 57 368 384
16 109 94 1 76 8 86 68 106 12 118 .53 3.585 .917 2 1 .125 .083 8 12 .633 639 208 41 57 385 401 3.585
17 124 90 1 63 110 67 104 98 .47 1.083 0 0 .394 678 208 41 57 403 419
18 127 90 58 105 61 95 90 .56 .875 0 0 .522 686 208 41 57 420 436
19 119 87 57 95 58 90 89 .41 .761 0 0 .303 642 208 41 57 437 453
20 105 86 10 68 13 78 55 85 21 106 .75 1.07 1.099 2 1 .769 .476 1.3 2.1 .601 688 208 41 57 454 470 1.07

Total number of rows: 7680

Table truncated, full table size 937 Kbytes.




Supplementary data files not provided
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