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Sample GSM953 Query DataSets for GSM953
Status Public on Feb 12, 2002
Title SWI4 3xHA IP with anti-HA, alpha-factor treated cells
Sample type RNA
 
Channel 1
Source name amplified genomic DNA
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name SWI4 3xHA IP with anti-HA, plus alpha-factor
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i16swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL50
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 48 44 4127 3823 3793 35 30 31 3951 3982 .95 0 -.063 .933 99 98 1.088 1.045 .919 .957 .869 849 156 58 72 185 199 -.063
2 44 40 180 205 181 29 24 25 188 213 .9 0 .063 .87 90 91 .994 .957 1.006 1.044 .92 397 80 62 72 205 215 .063
3 43 38 4721 4060 4034 30 26 27 4202 4229 .96 0 -.168 .891 100 100 1.17 1.124 .854 .89 .832 411 80 62 72 222 232 -.168
4 42 38 304 371 344 29 27 28 358 386 .97 0 .236 1.09 94 98 .884 .849 1.132 1.178 1.12 353 52 62 71 238 247 .236
5 44 40 558 852 823 33 29 30 857 887 .93 0 .619 1.511 98 100 .678 .651 1.475 1.536 1.264 408 80 62 72 257 267 .619
6 47 44 1172 1187 1153 38 34 35 1201 1236 .92 0 .035 .948 99 100 1.016 .976 .984 1.025 .883 630 156 58 72 272 286 .035
7 50 46 1607 1591 1555 40 36 37 1620 1657 .95 0 .012 .95 97 100 1.033 .992 .968 1.008 .902 417 120 60 72 290 302 .012
8 54 48 9657 14931 14893 47 38 39 15514 15553 .95 0 .684 1.527 100 100 .648 .622 1.542 1.607 1.546 571 156 59 73 306 320 .684
9 55 49 37 48 39 40 38 .13 .914 8 0 .121 618 156 58 73 323 338
10 55 49 1 42 55 44 45 43 .3 .884 8 0 .275 599 156 58 73 340 355
11 57 52 42 54 46 47 43 .26 1.04 9 0 .254 581 156 58 73 357 372
12 56 51 42 46 43 44 43 .23 .813 9 13 .196 564 156 58 73 375 390
13 54 51 43 47 43 44 44 .29 1.04 10 12 .263 626 156 57 72 392 407
14 56 53 3 46 49 46 47 47 .34 1.17 13 11 .313 652 156 57 72 409 424
15 60 56 47 52 48 50 48 .2 .75 12 12 .176 595 156 57 72 427 442
16 61 56 6 55 8 52 47 48 9 57 .39 .585 .9 18 20 .75 .667 1.333 1.5 .359 560 156 57 72 444 459 .585
17 65 60 53 3 55 50 52 3 55 .28 1.105 11 14 .279 626 156 57 72 461 476
18 78 64 5 70 13 69 57 59 13 72 .48 1.379 1.222 0 1 .385 .385 2.6 2.6 .464 637 156 57 72 479 494 1.379
19 92 62 51 76 56 58 53 .46 1.101 0 0 .434 606 156 57 72 496 511
20 72 57 48 81 51 53 50 .26 .929 0 0 .593 611 156 57 72 513 528

Total number of rows: 7680

Table truncated, full table size 926 Kbytes.




Supplementary data files not provided
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