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Sample GSM957 Query DataSets for GSM957
Status Public on Feb 12, 2002
Title SWI6 IP with anti-Swi6, unsynchronized cells (#A38)
Sample type RNA
 
Channel 1
Source name swi6 deletion
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name WT
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i71swi6
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL50
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 40 37 1016 1815 1782 37 33 24 1311 1335 .88 0 .368 1.568 92 98 .57 .775 1.754 1.29 1.615 509 80 84 94 83 93 .368
2 42 37 40 109 75 45 34 25 55 80 .6 0 .464 1.368 61 30 .533 .725 1.875 1.379 1.198 305 52 85 93 101 109 .464
3 41 33 1052 1539 1509 41 30 22 1110 1132 .86 0 .078 1.627 100 100 .697 .948 1.434 1.055 1.222 478 80 83 94 117 128 .078
4 36 29 26 62 35 35 27 20 26 46 .58 0 -.014 .948 36 32 .743 1.01 1.346 .99 1.624 454 120 82 94 133 145 -.014
5 37 31 94 103 75 36 28 21 55 76 .75 -100 .877 64 59 1.253 1.704 .798 .587 .525 603 156 82 96 147 161 -.769
6 40 34 377 472 440 40 32 24 324 347 .92 0 -.22 1.152 96 99 .857 1.165 1.167 .859 1.009 512 120 83 95 168 180 -.22
7 32 28 273 351 322 34 29 21 237 258 .92 0 -.205 1.162 82 76 .848 1.152 1.179 .868 1.135 658 156 82 96 185 199 -.205
8 31 27 2650 6611 6583 35 28 21 4843 4863 .94 0 .87 2.402 86 91 .403 .547 2.484 1.827 2.447 620 156 82 96 202 216 .87
9 29 24 1 30 1 33 29 21 1 22 .36 -.443 1.188 1 1 1 1.359 1 .736 .207 577 156 82 96 219 233 -.443
10 26 24 5 28 2 28 26 19 1 21 .13 -1.765 .833 17 15 2.5 3.398 .4 .294 .108 529 156 82 96 236 250 -1.765
11 27 25 7 35 9 29 26 19 7 26 .23 -.08 1 25 19 .778 1.057 1.286 .946 .386 528 156 82 96 251 265 -.08
12 28 26 35 9 29 26 19 7 26 .08 .894 8 23 .133 554 156 82 96 268 282
13 28 25 2 28 1 29 27 20 1 21 .17 -1.443 1 12 7 2 2.719 .5 .368 .143 551 156 82 96 285 299 -1.443
14 28 25 1 29 2 29 27 20 1 21 .17 .557 1.194 3 13 .5 .68 2 1.471 .119 586 156 82 96 302 316 .557
15 30 27 2 28 1 31 27 20 1 21 .04 -1.443 1.333 11 5 2 2.719 .5 .368 .037 579 156 83 97 320 334 -1.443
16 31 27 32 4 31 28 21 3 24 .13 1 2 4 .152 549 156 83 97 337 351
17 30 27 33 6 30 27 20 4 24 .17 1 6 12 .127 552 156 83 97 354 368
18 29 27 30 3 30 27 20 2 22 .08 .929 10 6 .079 553 156 83 97 371 385
19 27 26 2 31 4 29 27 20 3 23 .08 .557 1.129 14 20 .5 .68 2 1.471 .069 542 156 83 97 389 403 .557
20 27 24 4 31 5 27 26 19 4 23 .13 -.121 1.091 9 23 .8 1.087 1.25 .92 .177 536 156 83 97 406 420 -.121

Total number of rows: 7680

Table truncated, full table size 909 Kbytes.




Supplementary data files not provided
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