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Sample GSM958 Query DataSets for GSM958
Status Public on Feb 12, 2002
Title SWI4 IP with anti-HA, unsynchronized cells
Sample type RNA
 
Channel 1
Source name amplified genomic DNA
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name SWI4, IP with anti-HA
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze Pro scanning software was used.
Keywords = Chromatin IP
Keywords = Cell-cycle factors
Lot batch = i20swi4
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL50
Series (1)
GSE19 SBF-MBF genomic distribution

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 64 61 2996 3663 3603 62 60 52 3135 3188 .98 0 .066 1.261 100 100 .832 .956 1.203 1.047 1.16 1225 208 63 80 150 167 .066
2 68 60 121 212 151 70 61 53 131 184 .92 0 .119 1.164 48 55 .801 .921 1.248 1.086 1.098 463 120 69 81 171 183 .119
3 71 60 1725 2244 2182 72 62 54 1899 1953 .96 0 .139 1.253 96 97 .791 .908 1.265 1.101 1.193 454 120 71 83 188 200 .139
4 59 53 119 202 151 56 51 44 131 176 .91 0 .143 1.229 57 65 .788 .906 1.269 1.104 1.115 530 120 69 81 206 218 .143
5 54 49 324 758 713 50 45 39 620 660 .92 0 .937 2.27 100 100 .454 .522 2.201 1.915 1.787 336 80 71 81 225 235 .937
6 54 51 660 669 618 54 51 44 538 582 .94 0 -.295 .967 92 92 1.068 1.227 .936 .815 .885 829 208 65 81 238 254 -.295
7 54 52 1137 1074 1019 60 55 48 887 935 .96 0 -.359 .876 100 99 1.116 1.282 .896 .78 .853 368 120 70 82 258 270 -.359
8 56 52 6731 12799 12744 58 55 48 11090 11138 .97 0 .72 1.844 100 100 .528 .607 1.893 1.648 1.937 726 208 65 81 273 289 .72
9 60 55 7 63 1 64 62 54 1 55 .33 -3.008 1.02 19 19 7 8.044 .143 .124 .284 573 156 67 82 290 305 -3.008
10 61 56 59 67 63 55 -3 51 .29 1 11 10 .294 611 156 67 82 308 323
11 61 57 56 71 67 58 -10 49 .29 1.125 8 7 .3 599 156 67 82 325 340
12 63 59 63 72 68 59 -4 55 .33 1 12 11 .361 603 156 67 82 342 357
13 61 57 61 67 64 56 -3 53 .37 1.022 10 12 .356 603 156 67 82 359 374
14 59 53 57 62 60 52 -3 50 .34 1 8 12 .298 610 156 67 82 377 392
15 60 56 57 64 60 52 -3 50 .35 1.276 12 9 .338 609 156 67 82 394 409
16 62 58 64 69 65 57 -1 56 .31 1.102 10 14 .359 602 156 67 82 411 426
17 59 56 57 69 65 57 -7 50 .28 1.176 12 8 .315 596 156 67 82 429 444
18 59 55 65 5 65 60 52 4 57 .35 1.286 12 18 .466 578 156 67 82 446 461
19 60 57 57 67 62 54 -4 50 .34 1.272 5 13 .356 584 156 67 82 463 478
20 61 57 58 66 61 53 -3 50 .41 1 11 11 .442 586 156 67 82 480 495

Total number of rows: 7680

Table truncated, full table size 926 Kbytes.




Supplementary data files not provided
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