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Status |
Public on Jan 01, 2007 |
Title |
#148940 Soybean seed coat, OX951 & OX736, 2004 rep2 time course |
Sample type |
RNA |
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Channel 1 |
Source name |
OX736 Mid 2004 rep2
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Organism |
Glycine max |
Characteristics |
OX736, soybean cultivar, seed coat permeable to water
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Extracted molecule |
total RNA |
Label |
Cy3
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Channel 2 |
Source name |
OX951 Mid 2004 rep2
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Organism |
Glycine max |
Characteristics |
OX951, soybean cultivar, seed coat impermeable to water
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Extracted molecule |
total RNA |
Label |
Cy5
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Description |
Seed coat comparison between cultivars OX951, impermeable to water and OX736, permeable to water
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Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
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Submission date |
Feb 20, 2006 |
Last update date |
Feb 21, 2006 |
Contact name |
Mark Gijzen |
E-mail(s) |
gijzenm@agr.gc.ca
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Phone |
519-457-1470
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Fax |
519-457-3997
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Organization name |
SCPFRC London
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Department |
Agriculture & AgriFood Canada
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Lab |
Plant Biochemistry
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Street address |
1391 Sandford St
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City |
London |
State/province |
ON |
ZIP/Postal code |
N5V 4T3 |
Country |
Canada |
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Platform ID |
GPL3015 |
Series (1) |
GSE4276 |
Soybean cultivars OX951 & OX736, seed coat permeablity comparison |
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Data table header descriptions |
ID_REF |
rearranged for LRGC scanner |
CH1-VOL |
Cy3 intensity |
CH1-Bkgd |
Cy3 background |
CH1-sVOL |
Cy3 background subtracted intensity |
CH2-VOL |
Cy5 intensity |
CH2-Bkgd |
Cy5 background |
CH2-sVOL |
Cy5 background subtracted intensity |
RATIO |
CH2-VOL divided by CH1-VOL |
VALUE |
log2 ratio |
Data table |
ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
Gm00024cDNA18kA |
93.2722 |
5.064 |
88.208 |
85.6785 |
12.103 |
73.575 |
0.918585602 |
-0.122513924 |
Gm00120cDNA18kA |
58.1582 |
5.016 |
53.142 |
62.1951 |
12.218 |
49.978 |
1.069412396 |
0.096818305 |
Gm00216cDNA18kA |
20.8383 |
4.834 |
16.004 |
23.0984 |
12.204 |
10.894 |
1.108458943 |
0.148555335 |
Gm00312cDNA18kA |
169.2128 |
4.812 |
164.401 |
150.2787 |
12.067 |
138.212 |
0.888104801 |
-0.171198163 |
Gm00012cDNA18kA |
182.3806 |
4.956 |
177.425 |
141.2536 |
12.078 |
129.175 |
0.774499042 |
-0.36866464 |
Gm00108cDNA18kA |
67.963 |
5.057 |
62.906 |
50.5306 |
11.972 |
38.558 |
0.743501611 |
-0.427592226 |
Gm00204cDNA18kA |
175.1933 |
5.1 |
170.093 |
115.3594 |
12.072 |
103.287 |
0.658469245 |
-0.602812036 |
Gm00300cDNA18kA |
53.8611 |
5.211 |
48.65 |
36.1739 |
12.142 |
24.032 |
0.671614579 |
-0.574294547 |
Gm00408cDNA18kA |
48.7716 |
5.518 |
43.254 |
39.4562 |
12.181 |
27.275 |
0.8089995 |
-0.305789284 |
Gm00504cDNA18kA |
25.3461 |
5.42 |
19.926 |
24.3444 |
12.005 |
12.34 |
0.960479127 |
-0.058173833 |
Gm00600cDNA18kA |
11.1163 |
5.086 |
6.03 |
13.5924 |
11.831 |
1.761 |
1.222744978 |
0.290123539 |
Gm00696cDNA18kA |
19.3689 |
4.912 |
14.457 |
29.0151 |
12.08 |
16.935 |
1.498025185 |
0.583061878 |
Gm00396cDNA18kA |
66.0834 |
4.828 |
61.255 |
60.8634 |
11.942 |
48.921 |
0.921008907 |
-0.118712986 |
Gm00492cDNA18kA |
65.5177 |
4.816 |
60.701 |
55.4832 |
11.882 |
43.601 |
0.846842914 |
-0.239833714 |
Gm00588cDNA18kA |
22.1059 |
4.909 |
17.197 |
20.0574 |
12.451 |
7.607 |
0.907332432 |
-0.140296868 |
Gm00684cDNA18kA |
14.188 |
4.672 |
9.516 |
15.2533 |
12.398 |
2.855 |
1.075084579 |
0.104450163 |
Gm00792cDNA18kA |
104.2126 |
4.522 |
99.69 |
83.4246 |
12.026 |
71.398 |
0.800523161 |
-0.32098495 |
Gm00888cDNA18kA |
21.6512 |
4.672 |
16.979 |
22.274 |
12.191 |
10.083 |
1.028765149 |
0.040913675 |
Gm00984cDNA18kA |
38.1305 |
4.79 |
33.34 |
33.6634 |
12.174 |
21.489 |
0.882847065 |
-0.179764553 |
Gm01080cDNA18kA |
97.5874 |
4.934 |
92.653 |
60.5805 |
11.852 |
48.728 |
0.620781986 |
-0.687841401 |
Total number of rows: 19200
Table truncated, full table size 1533 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM97609.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
GSM97609_148940_1_Cy3.tif.gz |
74.4 Mb |
(ftp)(http) |
TIFF |
GSM97609_148940_2_Cy5.tif.gz |
77.6 Mb |
(ftp)(http) |
TIFF |
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