NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM97609 Query DataSets for GSM97609
Status Public on Jan 01, 2007
Title #148940 Soybean seed coat, OX951 & OX736, 2004 rep2 time course
Sample type RNA
 
Channel 1
Source name OX736 Mid 2004 rep2
Organism Glycine max
Characteristics OX736, soybean cultivar, seed coat permeable to water
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name OX951 Mid 2004 rep2
Organism Glycine max
Characteristics OX951, soybean cultivar, seed coat impermeable to water
Extracted molecule total RNA
Label Cy5
 
 
Description Seed coat comparison between cultivars OX951, impermeable to water and OX736, permeable to water
Data processing Arrayvision LRGC scanner layout, background subtracted intensity
 
Submission date Feb 20, 2006
Last update date Feb 21, 2006
Contact name Mark Gijzen
E-mail(s) gijzenm@agr.gc.ca
Phone 519-457-1470
Fax 519-457-3997
Organization name SCPFRC London
Department Agriculture & AgriFood Canada
Lab Plant Biochemistry
Street address 1391 Sandford St
City London
State/province ON
ZIP/Postal code N5V 4T3
Country Canada
 
Platform ID GPL3015
Series (1)
GSE4276 Soybean cultivars OX951 & OX736, seed coat permeablity comparison

Data table header descriptions
ID_REF rearranged for LRGC scanner
CH1-VOL Cy3 intensity
CH1-Bkgd Cy3 background
CH1-sVOL Cy3 background subtracted intensity
CH2-VOL Cy5 intensity
CH2-Bkgd Cy5 background
CH2-sVOL Cy5 background subtracted intensity
RATIO CH2-VOL divided by CH1-VOL
VALUE log2 ratio

Data table
ID_REF CH1-VOL CH1-Bkgd CH1-sVOL CH2-VOL CH2-Bkgd CH2-sVOL RATIO VALUE
Gm00024cDNA18kA 93.2722 5.064 88.208 85.6785 12.103 73.575 0.918585602 -0.122513924
Gm00120cDNA18kA 58.1582 5.016 53.142 62.1951 12.218 49.978 1.069412396 0.096818305
Gm00216cDNA18kA 20.8383 4.834 16.004 23.0984 12.204 10.894 1.108458943 0.148555335
Gm00312cDNA18kA 169.2128 4.812 164.401 150.2787 12.067 138.212 0.888104801 -0.171198163
Gm00012cDNA18kA 182.3806 4.956 177.425 141.2536 12.078 129.175 0.774499042 -0.36866464
Gm00108cDNA18kA 67.963 5.057 62.906 50.5306 11.972 38.558 0.743501611 -0.427592226
Gm00204cDNA18kA 175.1933 5.1 170.093 115.3594 12.072 103.287 0.658469245 -0.602812036
Gm00300cDNA18kA 53.8611 5.211 48.65 36.1739 12.142 24.032 0.671614579 -0.574294547
Gm00408cDNA18kA 48.7716 5.518 43.254 39.4562 12.181 27.275 0.8089995 -0.305789284
Gm00504cDNA18kA 25.3461 5.42 19.926 24.3444 12.005 12.34 0.960479127 -0.058173833
Gm00600cDNA18kA 11.1163 5.086 6.03 13.5924 11.831 1.761 1.222744978 0.290123539
Gm00696cDNA18kA 19.3689 4.912 14.457 29.0151 12.08 16.935 1.498025185 0.583061878
Gm00396cDNA18kA 66.0834 4.828 61.255 60.8634 11.942 48.921 0.921008907 -0.118712986
Gm00492cDNA18kA 65.5177 4.816 60.701 55.4832 11.882 43.601 0.846842914 -0.239833714
Gm00588cDNA18kA 22.1059 4.909 17.197 20.0574 12.451 7.607 0.907332432 -0.140296868
Gm00684cDNA18kA 14.188 4.672 9.516 15.2533 12.398 2.855 1.075084579 0.104450163
Gm00792cDNA18kA 104.2126 4.522 99.69 83.4246 12.026 71.398 0.800523161 -0.32098495
Gm00888cDNA18kA 21.6512 4.672 16.979 22.274 12.191 10.083 1.028765149 0.040913675
Gm00984cDNA18kA 38.1305 4.79 33.34 33.6634 12.174 21.489 0.882847065 -0.179764553
Gm01080cDNA18kA 97.5874 4.934 92.653 60.5805 11.852 48.728 0.620781986 -0.687841401

Total number of rows: 19200

Table truncated, full table size 1533 Kbytes.




Supplementary file Size Download File type/resource
GSM97609.txt.gz 1.1 Mb (ftp)(http) TXT
GSM97609_148940_1_Cy3.tif.gz 74.4 Mb (ftp)(http) TIFF
GSM97609_148940_2_Cy5.tif.gz 77.6 Mb (ftp)(http) TIFF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap