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GEO accession:
Sample GSM99041
Query DataSets for GSM99041
Status
Public on Mar 09, 2006
Title
HeLa MYC ChIP_array 58908
Sample type
genomic
Channel 1
Source name
MYC ChIP
Organism
Homo sapiens
Characteristics
ChIP
Extracted molecule
genomic DNA
Label
Cy5
Channel 2
Source name
matched Total DNA
Organism
Homo sapiens
Characteristics
Cy3
Extracted molecule
genomic DNA
Label
Cy3
Description
Determination of binding sites of MYC in HeLa cells using ChIP-chip, hg17 NimbleGen array
Data processing
minimal by NimbleGen
Submission date
Mar 06, 2006
Last update date
Mar 08, 2006
Contact name
Mark Bieda
E-mail(s)
markb7002000@yahoo.com
Organization name
University of Calgary
Department
Biochemistry and Molecular Biology
Lab
Bieda
Street address
3330 Hospital Dr NW
City
Calgary
State/province
AB
ZIP/Postal code
T2N4N1
Country
Canada
Platform ID
GPL3514
Series (1)
GSE4354
MYC binding sites in HeLa cells
Data table header descriptions
ID_REF
Rval
raw spot intensity values (Cy5)
Gval
raw spot intensity values (Cy3)
VALUE
log2(Rval/Gval)
Data table
ID_REF
Rval
Gval
VALUE
chr7_116605462
580.67
517.89
0.165073
chr7_115880080
571.78
484.00
0.240454
chr7_116072816
288.11
1122.56
-1.96211
chr7_116736524
247.22
542.44
-1.13367
chr7_116133464
175.78
200.78
-0.191845
chr7_116774144
666.56
636.22
0.0672093
chr7_115811642
309.11
338.33
-0.130311
chr7_116606602
473.67
459.11
0.0450426
chr7_116855844
466.44
442.44
0.07621
chr7_115823650
1075.89
1162.33
-0.11149
chr7_117101704
497.67
696.89
-0.485743
chr7_115810692
1247.44
808.00
0.626545
chr7_116217482
835.67
1338.11
-0.679194
chr7_117209434
191.00
215.89
-0.176724
chr7_116425684
878.67
786.00
0.160793
chr7_117225508
3574.67
3959.44
-0.147487
chr7_117230258
439.00
452.11
-0.042453
chr7_115843068
1026.78
878.67
0.224735
chr7_116934504
1405.33
627.78
1.16258
chr7_115900904
275.44
375.67
-0.447729
Total number of rows:
385149
Table truncated, full table size
14766 Kbytes
.
Supplementary data files not provided
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