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| Status |
Public on Mar 09, 2006 |
| Title |
ENCODE NimbleGen hg17_04252005 tiling array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen Inc. |
| Manufacture protocol |
see NimbleGen website
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| Contributor(s) |
Bieda MC, Xu S, Farnham P, Singer M, Green R |
| Submission date |
Mar 06, 2006 |
| Last update date |
Oct 27, 2010 |
| Contact name |
Mark Bieda |
| E-mail(s) |
markb7002000@yahoo.com
|
| Organization name |
University of Calgary
|
| Department |
Biochemistry and Molecular Biology
|
| Lab |
Bieda
|
| Street address |
3330 Hospital Dr NW
|
| City |
Calgary |
| State/province |
AB |
| ZIP/Postal code |
T2N4N1 |
| Country |
Canada |
| |
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| Samples (22)
|
GSM99039, GSM99040, GSM99041, GSM99042, GSM109841, GSM109842
GSM109843, GSM109844, GSM147141, GSM147142, GSM147143, GSM147292, GSM147322, GSM147323, GSM147324, GSM147325, GSM147326, GSM147327, GSM147328, GSM147329, GSM497556, GSM497557
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| Series (6)
|
| GSE4354 |
MYC binding sites in HeLa cells |
| GSE4355 |
E2F1 binding sites in MCF7 cells ENCODE |
| GSE4415 |
Characterization of E2F1 in HeLa and MCF7 cells |
| GSE4886 |
FAIRE performed in human foreskin fibroblast cells |
| GSE6375 |
E2F4 and Myc ChIP-chip perfomed on Nimblegen hg17 ENCODE arrays |
| GSE17616 |
A map of open chromatin in human pancreatic islets |
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| Data table header descriptions |
| ID |
|
| GENOME_ACC |
GenBank chromosome identifier (hg17) |
| CHROMOSOME |
chromosome number |
| RANGE_STRAND |
always plus |
| RANGE_START |
start point in chromosome |
| RANGE_END |
end point in chromosome |
| GB_RANGE |
Accession.version[start..end] |
| Data table |
| ID |
GENOME_ACC |
CHROMOSOME |
RANGE_STRAND |
RANGE_START |
RANGE_END |
GB_RANGE |
| chr7_90046790 |
NC_000007.11 |
chr7 |
+ |
90046790 |
90046839 |
NC_000007.11[90046790..90046839] |
| chr19_59909061 |
NC_000019.8 |
chr19 |
+ |
59909061 |
59909110 |
NC_000019.8[59909061..59909110] |
| chr18_23936402 |
NC_000018.8 |
chr18 |
+ |
23936402 |
23936451 |
NC_000018.8[23936402..23936451] |
| chr19_59384053 |
NC_000019.8 |
chr19 |
+ |
59384053 |
59384102 |
NC_000019.8[59384053..59384102] |
| chr6_41575413 |
NC_000006.9 |
chr6 |
+ |
41575413 |
41575462 |
NC_000006.9[41575413..41575462] |
| chr7_26749761 |
NC_000007.11 |
chr7 |
+ |
26749761 |
26749810 |
NC_000007.11[26749761..26749810] |
| chr6_132687118 |
NC_000006.9 |
chr6 |
+ |
132687118 |
132687167 |
NC_000006.9[132687118..132687167] |
| chr6_132226292 |
NC_000006.9 |
chr6 |
+ |
132226292 |
132226341 |
NC_000006.9[132226292..132226341] |
| chr10_55506421 |
NC_000010.8 |
chr10 |
+ |
55506421 |
55506470 |
NC_000010.8[55506421..55506470] |
| chr7_89501604 |
NC_000007.11 |
chr7 |
+ |
89501604 |
89501653 |
NC_000007.11[89501604..89501653] |
| chr20_33566483 |
NC_000020.9 |
chr20 |
+ |
33566483 |
33566532 |
NC_000020.9[33566483..33566532] |
| chr2_118327762 |
NC_000002.9 |
chr2 |
+ |
118327762 |
118327811 |
NC_000002.9[118327762..118327811] |
| chr11_130670158 |
NC_000011.8 |
chr11 |
+ |
130670158 |
130670207 |
NC_000011.8[130670158..130670207] |
| chr11_130636224 |
NC_000011.8 |
chr11 |
+ |
130636224 |
130636273 |
NC_000011.8[130636224..130636273] |
| chr21_33419117 |
NC_000021.7 |
chr21 |
+ |
33419117 |
33419166 |
NC_000021.7[33419117..33419166] |
| chr22_30444326 |
NC_000022.8 |
chr22 |
+ |
30444326 |
30444375 |
NC_000022.8[30444326..30444375] |
| chr22_31520410 |
NC_000022.8 |
chr22 |
+ |
31520410 |
31520459 |
NC_000022.8[31520410..31520459] |
| chr13_29492762 |
NC_000013.9 |
chr13 |
+ |
29492762 |
29492811 |
NC_000013.9[29492762..29492811] |
| chr11_64131231 |
NC_000011.8 |
chr11 |
+ |
64131231 |
64131280 |
NC_000011.8[64131231..64131280] |
| chr14_53044660 |
NC_000014.7 |
chr14 |
+ |
53044660 |
53044709 |
NC_000014.7[53044660..53044709] |
Total number of rows: 385149
Table truncated, full table size 32400 Kbytes.
| Supplementary data files not provided |
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