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Sample GSM993 Query DataSets for GSM993
Status Public on Feb 12, 2002
Title Sporulation t2hrs
Sample type RNA
 
Channel 1
Source name t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name t2hrs
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo2
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE27 Sporulation in yeast

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1427 7690 8374 7528 846 940 8364 9304 .95 0 .121 0 0 1.022 .919 .979 1.088 1 29 38 50 58 .121
2 1516 9093 9395 8533 862 957 9481 10438 .98 0 .06 0 0 1.066 .959 .938 1.043 1.06 31 40 498 507 .06
3 1426 6503 6878 6084 794 882 6760 7642 .95 0 .056 0 0 1.069 .962 .936 1.04 1.04 29 38 60 68 .056
4 1625 7688 8534 7562 972 1080 8402 9482 .97 0 .128 0 0 1.017 .915 .984 1.093 .99 31 40 508 517 .128
5 1354 5948 6618 5805 813 903 6450 7353 .95 0 .117 0 0 1.025 .922 .976 1.084 1 29 38 71 79 .117
6 1481 7261 7716 6921 795 883 7690 8573 .96 0 .083 0 0 1.049 .944 .953 1.059 1.02 31 40 519 528 .083
7 1277 385 1055 364 691 767 405 1172 .86 0 .073 0 0 1.058 .951 .945 1.052 .93 29 38 81 89 .073
8 1262 602 1311 619 692 768 688 1456 .9 0 .193 0 0 .973 .875 1.028 1.143 .88 31 40 529 538 .193
9 1301 244 919 193 726 806 215 1021 .4 0 -.183 0 0 1.264 1.135 .791 .881 .47 29 38 92 100 -.183
10 1378 213 867 159 708 786 177 963 .3 0 -.267 0 0 1.34 1.203 .746 .831 .39 31 40 540 549 -.267
11 1335 248 967 246 721 801 273 1074 .66 0 .139 0 0 1.008 .908 .992 1.101 .89 29 38 102 110 .139
12 1416 254 1003 221 782 868 246 1114 .74 0 -.046 0 0 1.149 1.033 .87 .969 .95 31 40 551 560 -.046
13 1760 14793 15052 14031 1021 1134 15590 16724 .95 0 .076 0 0 1.054 .949 .948 1.054 .99 480 489 50 58 .076
14 1340 4982 5437 4643 794 882 5159 6041 .84 0 .05 0 0 1.073 .966 .932 1.036 .88 477 486 498 507 .05
15 1343 5823 6577 5850 727 807 6500 7307 .86 -100 0 0 .995 .896 1.005 1.116 .89 480 489 60 68 .159
16 1450 5510 5778 5046 732 813 5607 6420 .87 0 .025 0 0 1.092 .983 .916 1.018 .94 477 486 508 517 .025
17 1335 5019 7033 6364 669 743 7071 7814 .64 -100 0 0 .789 .71 1.268 1.409 .41 480 489 71 79 .495
18 1250 4503 5012 4372 640 711 4857 5568 .84 0 .109 0 0 1.03 .927 .971 1.079 .87 477 486 519 528 .109
19 1198 878 1372 803 569 632 892 1524 .94 0 .023 0 0 1.093 .984 .915 1.016 1.03 480 489 81 89 .023
20 1070 502 983 433 550 611 481 1092 .56 0 -.062 0 0 1.159 1.044 .863 .958 .63 477 486 529 538 -.062

Total number of rows: 6384

Table truncated, full table size 649 Kbytes.




Supplementary data files not provided
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