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Sample GSM994 Query DataSets for GSM994
Status Public on Feb 12, 2002
Title Sporulation t5hrs
Sample type RNA
 
Channel 1
Source name t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name t5hrs
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo5
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE27 Sporulation in yeast

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1711 6645 6959 5950 1009 1159 6839 7998 .95 0 .042 0 0 1.117 .972 .895 1.029 1.04 30 38 55 62 .042
2 1902 10922 11802 10426 1376 1581 11984 13565 .95 0 .134 0 0 1.048 .911 .955 1.097 1 32 41 503 512 .134
3 1575 7160 6899 5971 928 1066 6863 7929 .96 0 -.061 0 0 1.199 1.043 .834 .959 1.19 30 38 65 72 -.061
4 1960 9023 9861 8552 1309 1504 9830 11334 .96 0 .124 0 0 1.055 .918 .948 1.089 1.01 32 41 513 522 .124
5 1725 6921 6852 5823 1029 1182 6693 7875 .96 0 -.048 0 0 1.189 1.034 .841 .967 1.15 30 38 76 83 -.048
6 1840 8416 9279 8134 1145 1316 9349 10665 .96 0 .152 0 0 1.035 .9 .966 1.111 1 32 41 524 533 .152
7 1426 564 1275 492 783 900 565 1465 .94 0 .003 0 0 1.146 .998 .872 1.002 .97 30 38 86 93 .003
8 1545 908 1653 762 891 1024 876 1900 .96 0 -.052 0 0 1.192 1.037 .839 .965 1.04 32 41 534 543 -.052
9 1566 413 1132 456 676 777 524 1301 .75 0 .343 0 0 .906 .788 1.104 1.269 .84 30 38 97 104 .343
10 1603 231 1045 295 750 862 339 1201 .12 0 .553 0 0 .783 .681 1.277 1.468 .11 32 41 545 554 .553
11 1619 332 1163 220 943 1083 253 1336 .48 0 -.392 0 0 1.509 1.312 .663 .762 .6 30 38 108 115 -.392
12 1616 408 1247 330 917 1054 379 1433 .84 0 -.106 0 0 1.236 1.077 .809 .929 .9 32 41 556 565 -.106
13 3415 15109 16601 13634 2967 3410 15671 19081 .98 0 .053 0 0 1.108 .964 .902 1.037 1.06 482 491 56 63 .053
14 2337 6907 8221 6702 1519 1745 7704 9449 .97 0 .158 0 0 1.031 .897 .97 1.115 1 479 487 505 513 .158
15 1503 6320 6522 5748 774 889 6607 7496 .97 0 .064 0 0 1.1 .957 .909 1.045 1.08 482 491 66 73 .064
16 2159 7979 8506 7135 1371 1575 8202 9777 .96 0 .04 0 0 1.118 .973 .894 1.028 1.08 479 487 515 523 .04
17 1445 4924 5187 4449 738 848 5114 5962 .98 0 .055 0 0 1.107 .963 .904 1.039 1.1 482 491 77 84 .055
18 1725 6395 6651 5684 967 1111 6533 7644 .95 0 .031 0 0 1.125 .979 .889 1.022 1.1 479 487 526 534 .031
19 1185 801 1373 804 569 654 924 1578 .99 -100 0 0 .996 .867 1.004 1.154 .85 482 491 87 94 .206
20 1405 1211 1862 1131 731 840 1300 2140 .96 -100 0 0 1.071 .932 .934 1.073 .97 479 487 536 544 .102

Total number of rows: 6384

Table truncated, full table size 657 Kbytes.




Supplementary data files not provided
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