NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM995 Query DataSets for GSM995
Status Public on Feb 12, 2002
Title Sporulation t7hrs
Sample type RNA
 
Channel 1
Source name t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name t7hrs
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo7
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE27 Sporulation in yeast

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1491 10305 10847 9867 980 1010 10172 11182 .93 0 -.019 0 0 1.044 1.013 .957 .987 1.03 21 28 73 80 -.019
2 1602 10069 10625 9521 1104 1138 9815 10953 .97 0 -.037 0 0 1.058 1.026 .946 .975 1.16 23 31 522 531 -.037
3 1550 11486 11573 10457 1116 1150 10780 11930 .95 0 -.092 0 0 1.098 1.065 .91 .939 1.15 21 28 83 90 -.092
4 1597 9242 10018 8829 1189 1225 9102 10327 .98 0 -.022 0 0 1.047 1.015 .955 .985 1.12 23 31 532 541 -.022
5 1723 9416 10444 9185 1259 1297 9470 10767 .93 0 .008 0 0 1.025 .994 .975 1.006 1.05 21 28 94 101 .008
6 1473 8253 9138 8136 1002 1032 8388 9420 .97 0 .023 0 0 1.014 .984 .986 1.016 1.07 23 31 543 552 .023
7 1313 612 1440 566 874 901 583 1484 .94 0 -.07 0 0 1.081 1.05 .925 .953 1.09 21 28 104 111 -.07
8 1293 1464 2466 1627 839 864 1678 2542 .96 0 .197 0 0 .9 .872 1.111 1.146 .88 23 31 553 562 .197
9 1488 387 1172 339 833 858 350 1208 .73 0 -.145 0 0 1.142 1.106 .876 .904 .82 21 28 115 122 -.145
10 1474 243 1084 309 775 798 319 1117 0 .393 0 0 .786 .762 1.272 1.313 23 31 564 573 .393
11 1559 340 1321 270 1051 1083 278 1361 .53 0 -.29 0 0 1.259 1.223 .794 .818 .74 21 28 126 133 -.29
12 1450 444 1450 456 994 1024 470 1494 .9 -100 0 0 .974 .945 1.027 1.059 1.02 23 31 575 584 .082
13 5157 18537 22204 18088 4116 4243 18647 22890 .96 0 .009 0 0 1.025 .994 .976 1.006 1.05 473 482 76 82 .009
14 2120 8887 10808 9303 1505 1551 9591 11142 .92 0 .11 0 0 .955 .927 1.047 1.079 .98 469 477 526 533 .11
15 1485 8982 9775 8826 949 978 9099 10077 .96 0 .019 0 0 1.018 .987 .983 1.013 1.03 473 482 86 92 .019
16 1908 11104 12705 11141 1564 1612 11485 13097 .96 0 .049 0 0 .997 .967 1.003 1.034 1.05 469 477 536 543 .049
17 1444 7213 7512 6490 1022 1053 6691 7744 .99 0 -.108 0 0 1.111 1.078 .9 .928 1.19 473 482 97 103 -.108
18 1884 8141 9656 8323 1333 1374 8580 9954 .95 0 .076 0 0 .978 .949 1.022 1.054 1.03 469 477 547 554 .076
19 1398 898 1810 910 900 927 938 1865 .94 0 .063 0 0 .987 .957 1.013 1.045 .94 473 482 107 113 .063
20 1388 1342 2197 1246 951 980 1284 2264 .97 -100 0 0 1.077 1.045 .928 .957 1.09 469 477 557 564 -.064

Total number of rows: 6384

Table truncated, full table size 669 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap