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Sample GSM996 Query DataSets for GSM996
Status Public on Feb 12, 2002
Title Sporulation t9hrs
Sample type RNA
 
Channel 1
Source name t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name t9hrs
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo9
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE27 Sporulation in yeast

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1355 4468 5787 4649 1138 1185 4843 6028 .78 0 .116 0 0 .961 .923 1.041 1.084 .8 29 38 72 80 .116
2 1212 4950 6058 5016 1042 1085 5225 6310 .92 0 .078 0 0 .987 .947 1.013 1.056 1.02 32 41 521 530 .078
3 1200 5493 6957 5957 1000 1041 6205 7246 .85 0 .176 0 0 .922 .885 1.084 1.13 .9 29 38 82 90 .176
4 1190 5974 6904 5972 932 970 6221 7191 .94 0 .058 0 0 1 .96 1 1.041 1.03 32 41 531 540 .058
5 1133 4212 5327 4460 867 903 4645 5548 .8 0 .141 0 0 .944 .907 1.059 1.103 .86 29 38 93 101 .141
6 1136 4989 5905 5065 840 875 5276 6151 .93 0 .081 0 0 .985 .946 1.015 1.058 1.02 32 41 542 551 .081
7 989 300 1019 296 723 753 308 1061 .63 0 .038 0 0 1.014 .974 .987 1.027 .65 29 38 103 111 .038
8 1032 349 1115 343 772 804 357 1161 .89 0 .033 0 0 1.017 .978 .983 1.023 .92 32 41 552 561 .033
9 1048 173 935 200 735 765 208 973 .17 0 .266 0 0 .865 .832 1.156 1.202 .17 29 38 114 122 .266
10 1068 186 922 174 748 779 181 960 0 -.039 0 0 1.069 1.028 .935 .973 32 41 563 572 -.039
11 1059 174 971 189 782 814 197 1011 .35 0 .179 0 0 .921 .883 1.086 1.132 .35 29 38 124 132 .179
12 1066 198 998 184 814 847 192 1039 .54 0 -.044 0 0 1.076 1.031 .929 .97 .72 32 41 574 583 -.044
13 2288 11773 14130 12004 2126 2214 12504 14718 .96 0 .087 0 0 .981 .942 1.02 1.062 1.03 479 489 71 81 .087
14 2783 4492 7079 4293 2786 2902 4471 7373 .94 0 -.007 0 0 1.046 1.005 .956 .995 1.1 476 487 520 530 -.007
15 1741 3809 5366 3874 1492 1554 4035 5589 .97 0 .083 0 0 .983 .944 1.017 1.059 1.07 479 489 81 91 .083
16 2218 4741 7126 4936 2190 2281 5141 7422 .97 0 .117 0 0 .96 .922 1.041 1.084 1.05 476 487 530 540 .117
17 1640 2826 4631 3193 1438 1497 3326 4823 .97 0 .235 0 0 .885 .85 1.13 1.177 .94 479 489 92 102 .235
18 2124 3659 5930 3843 2087 2173 4004 6177 .97 0 .13 0 0 .952 .914 1.05 1.094 1.04 476 487 541 551 .13
19 1537 521 2013 691 1322 1377 719 2096 .91 0 .465 0 0 .754 .725 1.326 1.38 .8 479 489 102 112 .465
20 1558 1247 3009 1610 1399 1457 1677 3134 .95 0 .427 0 0 .775 .744 1.291 1.345 .84 476 487 551 561 .427

Total number of rows: 6384

Table truncated, full table size 661 Kbytes.




Supplementary data files not provided
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