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Sample GSM998 Query DataSets for GSM998
Status Public on Feb 12, 2002
Title Sporulation t11hrs
Sample type RNA
 
Channel 1
Source name t0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name t11hrs
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = Sporulation
Keywords = Transcription Factors
Lot batch = spo11
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL67
Series (1)
GSE27 Sporulation in yeast

Data table header descriptions
ID_REF reference identifier
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1519 8471 8951 7765 1186 1235 8088 9323 .9 0 -.067 0 0 1.091 1.047 .917 .955 .97 24 31 70 77 -.067
2 1267 7750 9207 8230 977 1017 8573 9590 .95 0 .146 0 0 .942 .904 1.062 1.106 .99 27 35 520 529 .146
3 1675 7420 7846 6525 1321 1376 6796 8172 .94 0 -.127 0 0 1.137 1.092 .879 .916 1.11 24 31 80 87 -.127
4 1243 7853 8633 7623 1010 1052 7940 8992 .96 0 .016 0 0 1.03 .989 .971 1.011 1.1 27 35 530 539 .016
5 1383 6796 7747 6778 969 1009 7060 8069 .85 0 .055 0 0 1.003 .963 .997 1.039 .95 24 31 91 98 .055
6 1270 6795 7854 6679 1175 1223 6958 8181 .94 0 .034 0 0 1.017 .977 .983 1.024 1.07 27 35 541 550 .034
7 901 493 1133 491 642 668 512 1180 .94 0 .055 0 0 1.004 .963 .996 1.039 .94 24 31 101 108 .055
8 950 585 1357 693 664 691 722 1413 .9 0 .304 0 0 .844 .81 1.185 1.234 .79 27 35 551 560 .304
9 1071 206 793 158 635 661 165 826 .19 0 -.32 0 0 1.304 1.248 .767 .801 .25 24 31 112 119 -.32
10 966 177 753 164 589 613 171 784 .65 0 -.05 0 0 1.079 1.035 .927 .966 .82 27 35 562 571 -.05
11 999 203 836 149 687 715 155 870 .46 0 -.389 0 0 1.362 1.31 .734 .764 .59 24 31 123 130 -.389
12 893 214 780 198 582 606 206 812 .54 0 -.055 0 0 1.081 1.039 .925 .963 .83 27 35 573 582 -.055
13 1780 10980 12195 10812 1383 1440 11263 12703 .96 0 .037 0 0 1.016 .975 .985 1.026 1.06 475 484 71 81 .037
14 1382 4092 4971 3956 1015 1057 4121 5178 .95 0 .01 0 0 1.034 .993 .967 1.007 1.11 472 481 520 529 .01
15 1159 4152 4991 4274 717 746 4452 5198 .96 0 .101 0 0 .971 .933 1.029 1.072 1.02 475 484 81 91 .101
16 1356 4963 5675 4657 1018 1060 4851 5911 .97 0 -.033 0 0 1.066 1.023 .938 .977 1.15 472 481 530 539 -.033
17 1077 3576 3838 3142 696 725 3272 3997 .97 0 -.128 0 0 1.138 1.093 .879 .915 1.22 475 484 92 102 -.128
18 1251 4152 4674 3746 928 966 3902 4868 .97 0 -.09 0 0 1.108 1.064 .902 .94 1.19 472 481 541 550 -.09
19 1026 315 960 312 648 675 325 1000 .97 0 .045 0 0 1.01 .969 .99 1.032 1.04 475 484 102 112 .045
20 1077 697 1514 787 727 757 820 1577 .96 0 .234 0 0 .886 .85 1.129 1.176 .9 472 481 551 560 .234

Total number of rows: 6384

Table truncated, full table size 653 Kbytes.




Supplementary data files not provided
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