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    slmapb sarcolemma associated protein b [ Danio rerio (zebrafish) ]

    Gene ID: 393146, updated on 2-Nov-2024

    Summary

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    Official Symbol
    slmapbprovided by ZNC
    Official Full Name
    sarcolemma associated protein bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-809
    See related
    Ensembl:ENSDARG00000020764 AllianceGenome:ZFIN:ZDB-GENE-040426-809
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    slmap; zgc:55817
    Summary
    Predicted to be located in membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See slmapb in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (19590148..19604407)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (19663722..19678070)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene dynein, axonemal, heavy chain 12 Neighboring gene ATPase H+ transporting accessory protein 1 like b Neighboring gene filamin B, beta (actin binding protein 278) Neighboring gene abhydrolase domain containing 6, acylglycerol lipase b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Differential protein profile in zebrafish (Danio rerio) brain under the joint exposure of methyl parathion and cadmium. Ling XP, et al. Environ Sci Pollut Res Int, 2012 Nov. PMID 22767353
    2. Analysis and functional evaluation of the hair-cell transcriptome. McDermott BM Jr, et al. Proc Natl Acad Sci U S A, 2007 Jul 10. PMID 17606911, Free PMC Article
    3. Proteomics of early zebrafish embryos. Link V, et al. BMC Dev Biol, 2006 Jan 13. PMID 16412219, Free PMC Article
    4. Coherent but overlapping expression of microRNAs and their targets during vertebrate development. Shkumatava A, et al. Genes Dev, 2009 Feb 15. PMID 19240133, Free PMC Article
    5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC55817

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sarcolemma associated protein b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200177.1 → NP_956471.1  sarcolemma associated protein b

      See identical proteins and their annotated locations for NP_956471.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045462
      UniProtKB/TrEMBL
      Q7ZVP6
      Related
      ENSDARP00000024693.6, ENSDART00000021231.8
      Conserved Domains (1) summary
      TIGR02168
      Location:66 → 350
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      19590148..19604407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162050.5 → XP_005162107.1  sarcolemma associated protein b isoform X1

      UniProtKB/TrEMBL
      A0A8M2B8Z6
      Conserved Domains (1) summary
      TIGR02168
      Location:66 → 352
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395361.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      117731..131903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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