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    golga1 golgin A1 [ Danio rerio (zebrafish) ]

    Gene ID: 393811, updated on 27-Mar-2024

    Summary

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    Official Symbol
    golga1provided by ZNC
    Official Full Name
    golgin A1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1237
    See related
    Ensembl:ENSDARG00000008979 AllianceGenome:ZFIN:ZDB-GENE-040426-1237
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:63688; drgolgin97; CH211-158D24.1
    Summary
    Predicted to be active in Golgi apparatus. Orthologous to human GOLGA1 (golgin A1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See golga1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (41467921..41519090, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (41460293..41511443, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884065 Neighboring gene actin related protein 2/3 complex, subunit 5-like, a Neighboring gene si:ch211-158d24.2 Neighboring gene uncharacterized LOC103911555 Neighboring gene si:ch211-158d24.4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The Golgi matrix protein giantin is required for normal cilia function in zebrafish. Bergen DJM, et al. Biol Open, 2017 Aug 15. PMID 28546340, Free PMC Article
    2. Genome wide analysis reveals Zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish. Winata CL, et al. PLoS Genet, 2013 Oct. PMID 24204288, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC63688

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    golgin subfamily A member 1
    Names
    golgin97

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200838.2 → NP_957132.2  golgin subfamily A member 1

      See identical proteins and their annotated locations for NP_957132.2

      Status: PROVISIONAL

      Source sequence(s)
      AB245441
      UniProtKB/TrEMBL
      A1IH01
      Related
      ENSDARP00000136956.2, ENSDART00000167283.2
      Conserved Domains (4) summary
      pfam00038
      Location:416 → 647
      Filament; Intermediate filament protein
      pfam01465
      Location:789 → 830
      GRIP; GRIP domain
      pfam10212
      Location:453 → 643
      TTKRSYEDQ; Predicted coiled-coil domain-containing protein
      cl19252
      Location:679 → 732
      MreC; rod shape-determining protein MreC

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      41467921..41519090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169081.4 → XP_005169138.1  golgin subfamily A member 1 isoform X2

      UniProtKB/TrEMBL
      A0A2R8RQ00, A0A8M2BGD3
      Related
      ENSDARP00000150296.1, ENSDART00000180666.1
      Conserved Domains (3) summary
      TIGR02168
      Location:52 → 712
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01465
      Location:764 → 805
      GRIP; GRIP domain
      cl19252
      Location:654 → 707
      MreC; rod shape-determining protein MreC

    2. XM_005169080.4 → XP_005169137.1  golgin subfamily A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BGD2, B0S5A9
      Related
      ENSDARP00000089349.3, ENSDART00000098578.5
      Conserved Domains (3) summary
      TIGR02168
      Location:55 → 737
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01465
      Location:789 → 830
      GRIP; GRIP domain
      cl19252
      Location:679 → 732
      MreC; rod shape-determining protein MreC
    Nucleotide Protein Strain
    Heading Accession and Version

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