btbd10b BTB (POZ) domain containing 10b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: btbd10bprovided by ZNC
Official Full Name: BTB (POZ) domain containing 10bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-080104-5
See related: Ensembl:ENSDARG00000020252 AllianceGenome:ZFIN:ZDB-GENE-080104-5
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: id:ibd2027
Summary: Predicted to be involved in positive regulation of phosphorylation. Predicted to be active in cytoplasm. Is expressed in somite. Orthologous to human BTBD10 (BTB domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (66112194..66133758, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (65888546..65910107, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc96h07.x1 (e-PCR)
- UniSTS:204036

AA494747 (e-PCR)
- UniSTS:206975

fa12a08.s1 (e-PCR)
- UniSTS:188806

fc24d03.y1 (e-PCR)
- UniSTS:193193

fj23h01.y1 (e-PCR)
- UniSTS:198838

aa494747 (e-PCR)
- UniSTS:186807

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in positive regulation of phosphorylation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: BTB/POZ domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

66112194..66133758 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_682338.8 → XP_687430.2 BTB/POZ domain-containing protein 10

UniProtKB/TrEMBL

A0A8N7TCZ2, X1WDG9

Related

ENSDARP00000128268.1, ENSDART00000154961.2

Conserved Domains (2) summary

smart00225
Location:121 → 209

BTB; Broad-Complex, Tramtrack and Bric a brac

pfam16017
Location:153 → 382

BTB_3; BTB/POZ domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394713.1 Reference GRCz11 ALT_DRER_TU_1

Range

247159..267728 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021472027.1 → XP_021327702.1 BTB/POZ domain-containing protein 10

UniProtKB/TrEMBL

A0A8M9P9S6

Conserved Domains (1) summary

pfam16017
Location:119 → 224

BTB_3; BTB/POZ domain