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    leng9 leukocyte receptor cluster (LRC) member 9 [ Danio rerio (zebrafish) ]

    Gene ID: 768155, updated on 2-Nov-2024

    Summary

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    Official Symbol
    leng9provided by ZNC
    Official Full Name
    leukocyte receptor cluster (LRC) member 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-607
    See related
    Ensembl:ENSDARG00000062374 AllianceGenome:ZFIN:ZDB-GENE-061013-607
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi23e07; wu:fi23e07; zgc:154073
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human LENG9 (leukocyte receptor cluster member 9). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See leng9 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (13809823..13818079, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (13919894..13927935, complement)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene Josephin domain containing 2 Neighboring gene tweety family member 1 Neighboring gene folliculin Neighboring gene zgc:174888

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    leukocyte receptor cluster member 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077298.1 → NP_001070766.1  leukocyte receptor cluster member 9

      See identical proteins and their annotated locations for NP_001070766.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124803
      UniProtKB/TrEMBL
      Q08BA7
      Conserved Domains (3) summary
      smart00356
      Location:29 → 53
      ZnF_C3H1; zinc finger
      pfam04457
      Location:127 → 179
      DUF504; Protein of unknown function (DUF504)
      pfam10469
      Location:350 → 539
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      13809823..13818079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214016.1 → XP_068070117.1  leukocyte receptor cluster member 9 isoform X1

      Related
      ENSDARP00000113462.1, ENSDART00000144856.3

    2. XM_005157900.5 → XP_005157957.1  leukocyte receptor cluster member 9 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B4R6, F1R3F5
      Conserved Domains (3) summary
      smart00356
      Location:29 → 53
      ZnF_C3H1; zinc finger
      pfam04457
      Location:127 → 179
      DUF504; Protein of unknown function (DUF504)
      pfam10469
      Location:350 → 539
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    3. XM_021466755.2 → XP_021322430.1  leukocyte receptor cluster member 9 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PMM0
      Conserved Domains (2) summary
      pfam04457
      Location:101 → 153
      DUF504; Protein of unknown function (DUF504)
      cl26521
      Location:324 → 513
      AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394957.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      331518..339555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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