Search Toolkit Book for CAlignMap::SMapRange

#include <algo/gnomon/gnomon_model.hpp>

Collaboration diagram for CAlignMap::SMapRange:

Public Member Functions
	SMapRange (SMapRangeEdge from, SMapRangeEdge to, const string &mism)

SMapRangeEdge	GetEdgeFrom () const

SMapRangeEdge	GetEdgeTo () const

void	SetEdgeFrom (SMapRangeEdge from)

void	SetEdgeTo (SMapRangeEdge to)

void	MoveOrigin (TSignedSeqPos shift)

TSignedSeqPos	GetFrom () const

TSignedSeqPos	GetTo () const

TSignedSeqPos	GetExtendedFrom () const

TSignedSeqPos	GetExtendedTo () const

TSignedSeqPos	GetExtraFrom () const

string	GetExtraSeqFrom () const

TSignedSeqPos	GetExtraTo () const

string	GetExtraSeqTo () const

EEdgeType	GetTypeFrom () const

EEdgeType	GetTypeTo () const

const string &	GetMismatch () const

bool	operator< (const SMapRange &mr) const

Private Attributes
SMapRangeEdge	m_from

SMapRangeEdge	m_to

string	m_mism_seq

Detailed Description

Definition at line 684 of file gnomon_model.hpp.

Constructor & Destructor Documentation

◆ SMapRange()

CAlignMap::SMapRange::SMapRange	(	SMapRangeEdge	from,
		SMapRangeEdge	to,
		const string &	mism
	)

inline

Definition at line 686 of file gnomon_model.hpp.

Member Function Documentation

◆ GetEdgeFrom()

SMapRangeEdge CAlignMap::SMapRange::GetEdgeFrom ( ) const

inline

Definition at line 687 of file gnomon_model.hpp.

References m_from.

◆ GetEdgeTo()

SMapRangeEdge CAlignMap::SMapRange::GetEdgeTo ( ) const

inline

Definition at line 688 of file gnomon_model.hpp.

References m_to.

◆ GetExtendedFrom()

TSignedSeqPos CAlignMap::SMapRange::GetExtendedFrom ( ) const

inline

Definition at line 697 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_extra, m_from, and CAlignMap::SMapRangeEdge::m_pos.

◆ GetExtendedTo()

TSignedSeqPos CAlignMap::SMapRange::GetExtendedTo ( ) const

inline

Definition at line 698 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_extra, CAlignMap::SMapRangeEdge::m_pos, and m_to.

◆ GetExtraFrom()

TSignedSeqPos CAlignMap::SMapRange::GetExtraFrom ( ) const

inline

Definition at line 699 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_extra, and m_from.

◆ GetExtraSeqFrom()

string CAlignMap::SMapRange::GetExtraSeqFrom ( ) const

inline

Definition at line 700 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_extra_seq, and m_from.

◆ GetExtraSeqTo()

string CAlignMap::SMapRange::GetExtraSeqTo ( ) const

inline

Definition at line 702 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_extra_seq, and m_to.

◆ GetExtraTo()

TSignedSeqPos CAlignMap::SMapRange::GetExtraTo ( ) const

inline

Definition at line 701 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_extra, and m_to.

◆ GetFrom()

TSignedSeqPos CAlignMap::SMapRange::GetFrom ( ) const

inline

Definition at line 695 of file gnomon_model.hpp.

References m_from, and CAlignMap::SMapRangeEdge::m_pos.

◆ GetMismatch()

const string& CAlignMap::SMapRange::GetMismatch ( ) const

inline

Definition at line 705 of file gnomon_model.hpp.

References m_mism_seq.

◆ GetTo()

TSignedSeqPos CAlignMap::SMapRange::GetTo ( ) const

inline

Definition at line 696 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_pos, and m_to.

◆ GetTypeFrom()

EEdgeType CAlignMap::SMapRange::GetTypeFrom ( ) const

inline

Definition at line 703 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_edge_type, and m_from.

◆ GetTypeTo()

EEdgeType CAlignMap::SMapRange::GetTypeTo ( ) const

inline

Definition at line 704 of file gnomon_model.hpp.

References CAlignMap::SMapRangeEdge::m_edge_type, and m_to.

◆ MoveOrigin()

void CAlignMap::SMapRange::MoveOrigin ( TSignedSeqPos shift )

inline

Definition at line 691 of file gnomon_model.hpp.

References m_from, CAlignMap::SMapRangeEdge::m_pos, and m_to.

◆ operator<()

bool CAlignMap::SMapRange::operator< ( const SMapRange & mr ) const

inline

Definition at line 706 of file gnomon_model.hpp.

References m_from, CAlignMap::SMapRangeEdge::m_pos, and m_to.

◆ SetEdgeFrom()

void CAlignMap::SMapRange::SetEdgeFrom ( SMapRangeEdge from )

inline

Definition at line 689 of file gnomon_model.hpp.

References m_from.

◆ SetEdgeTo()

void CAlignMap::SMapRange::SetEdgeTo ( SMapRangeEdge to )

inline

Definition at line 690 of file gnomon_model.hpp.

References m_to.

Member Data Documentation

◆ m_from

SMapRangeEdge CAlignMap::SMapRange::m_from

private

Definition at line 712 of file gnomon_model.hpp.

Referenced by GetEdgeFrom(), GetExtendedFrom(), GetExtraFrom(), GetExtraSeqFrom(), GetFrom(), GetTypeFrom(), MoveOrigin(), operator<(), and SetEdgeFrom().

◆ m_mism_seq

string CAlignMap::SMapRange::m_mism_seq

private

Definition at line 713 of file gnomon_model.hpp.

Referenced by GetMismatch().

◆ m_to

SMapRangeEdge CAlignMap::SMapRange::m_to

private

Definition at line 712 of file gnomon_model.hpp.

Referenced by GetEdgeTo(), GetExtendedTo(), GetExtraSeqTo(), GetExtraTo(), GetTo(), GetTypeTo(), MoveOrigin(), operator<(), and SetEdgeTo().

The documentation for this class was generated from the following file:

include/algo/gnomon/gnomon_model.hpp

Public Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ SMapRange()

Member Function Documentation

◆ GetEdgeFrom()

◆ GetEdgeTo()

◆ GetExtendedFrom()

◆ GetExtendedTo()

◆ GetExtraFrom()

◆ GetExtraSeqFrom()

◆ GetExtraSeqTo()

◆ GetExtraTo()

◆ GetFrom()

◆ GetMismatch()

◆ GetTo()

◆ GetTypeFrom()

◆ GetTypeTo()

◆ MoveOrigin()

◆ operator<()

◆ SetEdgeFrom()

◆ SetEdgeTo()

Member Data Documentation

◆ m_from

◆ m_mism_seq

◆ m_to