NCBI C++ ToolKit
|
Search Toolkit Book for CCoreDef_Base
#include <objects/scoremat/CoreDef_.hpp>
Public Types | |
enum class | E_memberIndex { e__allMandatory = 0 , e_nblocks , e_blocks , e_loops , e_isDiscontinuous , e_insertions } |
typedef int | TNblocks |
typedef list< CRef< CCoreBlock > > | TBlocks |
typedef list< CRef< CLoopConstraint > > | TLoops |
typedef bool | TIsDiscontinuous |
typedef list< int > | TInsertions |
typedef Tparent::CMemberIndex< E_memberIndex, 6 > | TmemberIndex |
Public Types inherited from CObject | |
enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
Control filling of newly allocated memory. More... | |
typedef CObjectCounterLocker | TLockerType |
Default locker type for CRef. More... | |
typedef atomic< Uint8 > | TCounter |
Counter type is CAtomiCounter. More... | |
typedef Uint8 | TCount |
Alias for value type of counter. More... | |
Public Member Functions | |
CCoreDef_Base (void) | |
virtual | ~CCoreDef_Base (void) |
DECLARE_INTERNAL_TYPE_INFO () | |
bool | IsSetNblocks (void) const |
number of core elements/blocks Check if a value has been assigned to Nblocks data member. More... | |
bool | CanGetNblocks (void) const |
Check if it is safe to call GetNblocks method. More... | |
void | ResetNblocks (void) |
Reset Nblocks data member. More... | |
TNblocks | GetNblocks (void) const |
Get the Nblocks member data. More... | |
void | SetNblocks (TNblocks value) |
Assign a value to Nblocks data member. More... | |
TNblocks & | SetNblocks (void) |
Assign a value to Nblocks data member. More... | |
bool | IsSetBlocks (void) const |
nblocks locations Check if a value has been assigned to Blocks data member. More... | |
bool | CanGetBlocks (void) const |
Check if it is safe to call GetBlocks method. More... | |
void | ResetBlocks (void) |
Reset Blocks data member. More... | |
const TBlocks & | GetBlocks (void) const |
Get the Blocks member data. More... | |
TBlocks & | SetBlocks (void) |
Assign a value to Blocks data member. More... | |
bool | IsSetLoops (void) const |
(nblocks+1) constraints Check if a value has been assigned to Loops data member. More... | |
bool | CanGetLoops (void) const |
Check if it is safe to call GetLoops method. More... | |
void | ResetLoops (void) |
Reset Loops data member. More... | |
const TLoops & | GetLoops (void) const |
Get the Loops member data. More... | |
TLoops & | SetLoops (void) |
Assign a value to Loops data member. More... | |
bool | IsSetIsDiscontinuous (void) const |
is it a discontinuous domain Check if a value has been assigned to IsDiscontinuous data member. More... | |
bool | CanGetIsDiscontinuous (void) const |
Check if it is safe to call GetIsDiscontinuous method. More... | |
void | ResetIsDiscontinuous (void) |
Reset IsDiscontinuous data member. More... | |
TIsDiscontinuous | GetIsDiscontinuous (void) const |
Get the IsDiscontinuous member data. More... | |
void | SetIsDiscontinuous (TIsDiscontinuous value) |
Assign a value to IsDiscontinuous data member. More... | |
TIsDiscontinuous & | SetIsDiscontinuous (void) |
Assign a value to IsDiscontinuous data member. More... | |
bool | IsSetInsertions (void) const |
positions of long insertions Check if a value has been assigned to Insertions data member. More... | |
bool | CanGetInsertions (void) const |
Check if it is safe to call GetInsertions method. More... | |
void | ResetInsertions (void) |
Reset Insertions data member. More... | |
const TInsertions & | GetInsertions (void) const |
Get the Insertions member data. More... | |
TInsertions & | SetInsertions (void) |
Assign a value to Insertions data member. More... | |
virtual void | Reset (void) |
Reset the whole object. More... | |
Public Member Functions inherited from CSerialObject | |
CSerialObject (void) | |
virtual | ~CSerialObject (void) |
virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
Set object to copy of another one. More... | |
virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
Check if both objects contain the same values. More... | |
virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
Define method for dumping debug information. More... | |
void | ThrowUnassigned (TMemberIndex index) const |
void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
bool | HasNamespaceName (void) const |
Check if object data type has namespace name. More... | |
const string & | GetNamespaceName (void) const |
Get namespace name. More... | |
bool | HasNamespacePrefix (void) const |
Check if data type has namespace prefix. More... | |
const string & | GetNamespacePrefix (void) const |
Get namespace prefix. More... | |
Public Member Functions inherited from CObject | |
CObject (void) | |
Constructor. More... | |
CObject (const CObject &src) | |
Copy constructor. More... | |
virtual | ~CObject (void) |
Destructor. More... | |
CObject & | operator= (const CObject &src) THROWS_NONE |
Assignment operator. More... | |
bool | CanBeDeleted (void) const THROWS_NONE |
Check if object can be deleted. More... | |
bool | IsAllocatedInPool (void) const THROWS_NONE |
Check if object is allocated in memory pool (not system heap) More... | |
bool | Referenced (void) const THROWS_NONE |
Check if object is referenced. More... | |
bool | ReferencedOnlyOnce (void) const THROWS_NONE |
Check if object is referenced only once. More... | |
void | AddReference (void) const |
Add reference to object. More... | |
void | RemoveReference (void) const |
Remove reference to object. More... | |
void | ReleaseReference (void) const |
Remove reference without deleting object. More... | |
virtual void | DoNotDeleteThisObject (void) |
Mark this object as not allocated in heap – do not delete this object. More... | |
virtual void | DoDeleteThisObject (void) |
Mark this object as allocated in heap – object can be deleted. More... | |
void * | operator new (size_t size) |
Define new operator for memory allocation. More... | |
void * | operator new[] (size_t size) |
Define new[] operator for 'array' memory allocation. More... | |
void | operator delete (void *ptr) |
Define delete operator for memory deallocation. More... | |
void | operator delete[] (void *ptr) |
Define delete[] operator for memory deallocation. More... | |
void * | operator new (size_t size, void *place) |
Define new operator. More... | |
void | operator delete (void *ptr, void *place) |
Define delete operator. More... | |
void * | operator new (size_t size, CObjectMemoryPool *place) |
Define new operator using memory pool. More... | |
void | operator delete (void *ptr, CObjectMemoryPool *place) |
Define delete operator. More... | |
Public Member Functions inherited from CDebugDumpable | |
CDebugDumpable (void) | |
virtual | ~CDebugDumpable (void) |
void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
void | DumpToConsole (void) const |
Private Types | |
typedef CSerialObject | Tparent |
Private Member Functions | |
CCoreDef_Base (const CCoreDef_Base &) | |
CCoreDef_Base & | operator= (const CCoreDef_Base &) |
Private Attributes | |
Uint4 | m_set_State [1] |
int | m_Nblocks |
list< CRef< CCoreBlock > > | m_Blocks |
list< CRef< CLoopConstraint > > | m_Loops |
bool | m_IsDiscontinuous |
list< int > | m_Insertions |
Additional Inherited Members | |
Static Public Member Functions inherited from CSerialObject | |
static void | SetVerifyDataThread (ESerialVerifyData verify) |
static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
static string | UnassignedString (void) |
static CStringUTF8 | UnassignedStringUTF8 (void) |
static char | UnassignedByte (void) |
Static Public Member Functions inherited from CObject | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
Define method to throw null pointer exception. More... | |
static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
static EAllocFillMode | GetAllocFillMode (void) |
static void | SetAllocFillMode (EAllocFillMode mode) |
static void | SetAllocFillMode (const string &value) |
Set mode from configuration parameter value. More... | |
Static Public Member Functions inherited from CDebugDumpable | |
static void | EnableDebugDump (bool on) |
Static Public Attributes inherited from CSerialObject | |
static const char * | ms_UnassignedStr = "<*unassigned*>" |
static const char | ms_UnassignedByte = char(0xcd) |
Static Public Attributes inherited from CObject | |
static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
Define possible object states. More... | |
static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
Heap signature was found. More... | |
static const TCount | eCounterBitsPlaceMask |
Mask for 'in heap' state flags. More... | |
static const int | eCounterStep = 1 << 2 |
Skip over the "in heap" bits. More... | |
static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
static const TCount | eCounterStateMask |
Valid object, and object in heap. More... | |
Protected Member Functions inherited from CObject | |
virtual void | DeleteThis (void) |
Virtual method "deleting" this object. More... | |
Definition at line 77 of file CoreDef_.hpp.