CFlatFileViewContext Class Reference

Search Toolkit Book for CFlatFileViewContext

#include <gui/widgets/seq/flat_file_context.hpp>

Inheritance diagram for CFlatFileViewContext:

Collaboration diagram for CFlatFileViewContext:

Public Member Functions
	CFlatFileViewContext (objects::IFormatter &formatter, objects::CScope &scope, const CSerialObject *so, IBioseqEditor *bioseqEditor)
	~CFlatFileViewContext ()
virtual int	GetLeftMargin () const
virtual void	RootInitialized ()
objects::IFormatter &	GetFormatter ()
virtual wxMenu *	CreateMenu () const
virtual void	SetPanel (CTextItemPanel *panel)
virtual void	GetVisibleObjects (TConstScopedObjects &objects)
void	OnEditBioseq (objects::CBioseq_Handle &bh, wxPoint pos)
virtual void	EditItem (ITextItem *item, bool controlDown, bool shiftDown)
virtual bool	IsEditingEnabled () const
virtual bool	FindSequence (const wxString &text)
virtual void	InitDrawStream (CDrawTextOStream &stream, int startLine)
bool	ShowEditIcons () const
CEditObject	GetEditObject (CFlatFileTextItem &ffItem)
IBioseqEditorCB interface implementation
virtual void	GetItemSelection (TFlatItemList &itemList)
virtual void	GetCurrentSelection (TEditObjectList &objects)
virtual objects::CBioseq_Handle	GetCurrentBioseq ()
virtual wxString	GetWorkDir () const
Public Member Functions inherited from CTextPanelContext
	CTextPanelContext (int leftMargin, objects::CScope *scope, const CSerialObject *so)
	~CTextPanelContext ()
CTextItemPanel *	GetPanel ()
int	GetIndentWidth () const
void	SelectItem (ITextItem *item, bool controlDown, bool shiftDown)
bool	IsItemSelected (ITextItem *item)
void	GetSelectedObjects (TConstObjects &objs)
void	SetSelectedObjects (const TConstObjects &objs)
void	GetActiveObjects (TConstScopedObjects &objects)
void	GetActiveObjects (vector< TConstScopedObjects > &objects)
void	GetSelectedObjects (TConstScopedObjects &objects)
virtual void	GetMainObjects (TConstScopedObjects &objects)
const set< ITextItem * > &	GetSelectedTextItems (void)
void	ClearMouseMove ()
void	AddHier (ITextItem *item)
void	MouseOverItem (ITextItem *item)
void	TriggerTooltip ()
virtual void	MouseMoveInContainer (ITextItem *)
virtual wxWindow *	CreateTooltipWindow ()
ITextItem *	GetHighlightedItem ()
void	SetHighlightedItem (ITextItem *pItem)
objects::CScope *	GetScope ()
void	CalcWSize (wxDC &dc)
wxSize	GetWSize () const
void	SetWSize (wxSize wSize)
int	GetWWidth () const
int	GetWHeight () const
void	SetFontDesc (wxWindow &wnd)
void	SetFontDesc (const wxString &fontDesc)
const wxString &	GetFontDesc () const
wxPoint	GetDeviceOrigin () const
void	SetDeviceOrigin (wxPoint drawDeviceOrigin)
void	SetDeviceOrigin (wxDC &dc) const
ICanceled *	SetCanceled (ICanceled *canceled)
bool	IsCanceled () const
void	SetWorkDir (const wxString &workDir)
Public Member Functions inherited from IBioseqEditorCB
virtual	~IBioseqEditorCB ()
virtual bool	MayCreateFeatures () const

Static Public Member Functions
static void	RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)

Protected Types
typedef pair< const objects::CSeqdesc *, objects::CBioseqContext * >	TEditDesc
typedef pair< objects::CSeq_feat_Handle, objects::CBioseqContext * >	TEditFeat

Protected Member Functions
void	OnExpandAllFeatures (wxCommandEvent &event)
void	OnCollapseAllFeatures (wxCommandEvent &event)
void	OnExpandSeqBlocks (wxCommandEvent &event)
void	OnCollapseSeqBlocks (wxCommandEvent &event)
void	OnCollapseSequences (wxCommandEvent &event)
void	OnExpandAll (wxCommandEvent &event)

Protected Attributes
CRef< objects::IFormatter >	m_Formatter
objects::CBioseq_Handle	m_CurBioseq
CIRef< IBioseqEditor >	m_BioseqEditor
CTextBlock	m_MarkedSeq
Protected Attributes inherited from CTextPanelContext
CTextItemPanel *	m_Panel
CRef< objects::CScope >	m_Scope
CConstRef< CSerialObject >	m_SO
vector< ITextItem * >	m_Hier
ITextItem *	m_MouseOverItem
set< ITextItem * >	m_SelectedItems
wxString	m_WorkDir

Additional Inherited Members
Public Attributes inherited from CTextPanelContext
bool	m_ItemCollapsed

Detailed Description

Definition at line 59 of file flat_file_context.hpp.

Member Typedef Documentation

TEditDesc

typedef pair<const objects::CSeqdesc*, objects::CBioseqContext*> CFlatFileViewContext::TEditDesc

protected

Definition at line 105 of file flat_file_context.hpp.

TEditFeat

typedef pair<objects::CSeq_feat_Handle, objects::CBioseqContext*> CFlatFileViewContext::TEditFeat

protected

Definition at line 106 of file flat_file_context.hpp.

Constructor & Destructor Documentation

CFlatFileViewContext()

CFlatFileViewContext::CFlatFileViewContext	(	objects::IFormatter &	formatter,
		objects::CScope &	scope,
		const CSerialObject *	so,
		IBioseqEditor *	bioseqEditor
	)

Definition at line 91 of file flat_file_context.cpp.

~CFlatFileViewContext()

CFlatFileViewContext::~CFlatFileViewContext

(

)

Definition at line 104 of file flat_file_context.cpp.

References m_BioseqEditor, and CTextPanelContext::m_Panel.

Member Function Documentation

CreateMenu()

static wxMenu * CFlatFileViewContext::CreateMenu ( ) const

virtual

Reimplemented from CTextPanelContext.

Definition at line 278 of file flat_file_context.cpp.

References CUICommandRegistry::CreateMenu(), CUICommandRegistry::GetInstance(), and Merge().

EditItem()

void CFlatFileViewContext::EditItem ( ITextItem *  item, bool  controlDown, bool  shiftDown  )

virtual

Reimplemented from CTextPanelContext.

Definition at line 291 of file flat_file_context.cpp.

References m_BioseqEditor.

FindSequence()

bool CFlatFileViewContext::FindSequence ( const wxString &  text )

virtual

Reimplemented from CTextPanelContext.

Definition at line 765 of file flat_file_context.cpp.

References buffer, CTextBlock::GetStart(), CTextItemPanel::GetTextSelection(), m_MarkedSeq, CTextPanelContext::m_Panel, CTextItemPanel::MakePosVisible(), CFlatFileSeqBlockIterator::NextSequence(), CTextBlock::Normalized(), CTextItemPanel::SetSelection(), CTextPosition::ShiftCol(), text(), ToStdString(), NStr::ToUpper(), and NStr::TruncateSpacesInPlace().

GetCurrentBioseq()

CBioseq_Handle CFlatFileViewContext::GetCurrentBioseq ( )

virtual

Implements IBioseqEditorCB.

Definition at line 755 of file flat_file_context.cpp.

References m_CurBioseq.

GetCurrentSelection()

void CFlatFileViewContext::GetCurrentSelection ( TEditObjectList &  objects )

virtual

Implements IBioseqEditorCB.

Definition at line 723 of file flat_file_context.cpp.

References set< Key, Compare >::end(), set< Key, Compare >::find(), GetEditObject(), CExpandItem::GetExpandedItem(), set< Key, Compare >::insert(), ITERATE, CEditObject::m_Obj, and CTextPanelContext::m_SelectedItems.

GetEditObject()

CEditObject CFlatFileViewContext::GetEditObject

(

CFlatFileTextItem &

ffItem

)

Definition at line 461 of file flat_file_context.cpp.

References ctx, data, CSeqFeatData_Base::e_Biosrc, CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Title, CSeqdesc_Base::e_User, CScope::eMissing_Null, NStr::EqualNocase(), CFlatItem::GetContext(), CSeq_feat_Base::GetData(), CDeflineItem::GetDefline(), CSequenceItem::GetFrom(), CSeqdesc_Base::GetMolinfo(), CFlatItem::GetObject(), CSeq_feat_Handle::GetOriginalSeq_feat(), CConstRef< C, Locker >::GetPointer(), CBioseq_Handle::GetRangeSeq_loc(), CBioseq_Handle::GetSeq_entry_Handle(), CSeqdesc_Base::GetSource(), CObject_id_Base::GetStr(), CSequenceItem::GetTo(), CUser_object_Base::GetType(), CSeqdesc_Base::IsPub(), CSeqdesc_Base::IsSource(), CObject_id_Base::IsStr(), and CFlatFileTextItem::m_Item.

Referenced by GetCurrentSelection().

GetFormatter()

objects::IFormatter& CFlatFileViewContext::GetFormatter ( )

inline

Definition at line 76 of file flat_file_context.hpp.

References m_Formatter.

Referenced by CFlatFileTextItem::GetToolTipText(), CFlatFileTextItem::x_CalcLineCount(), CFlatFileFeatureCollapsed::x_GetText(), CFlatFileSeqBlockCollapsed::x_RenderText(), and CFlatFileTextItem::x_RenderText().

GetItemSelection()

void CFlatFileViewContext::GetItemSelection ( TFlatItemList &  itemList )

virtual

Implements IBioseqEditorCB.

Definition at line 705 of file flat_file_context.cpp.

References CFlatFileTextItem::GetEditFlags(), CExpandItem::GetExpandedItem(), CFlatFileTextItem::GetFlatItem(), ITERATE, and CTextPanelContext::m_SelectedItems.

GetLeftMargin()

int CFlatFileViewContext::GetLeftMargin ( ) const

virtual

Reimplemented from CTextPanelContext.

Definition at line 111 of file flat_file_context.cpp.

References CTextPanelContext::GetWWidth(), and ShowEditIcons().

GetVisibleObjects()

void CFlatFileViewContext::GetVisibleObjects ( TConstScopedObjects &  objects )

virtual

Reimplemented from CTextPanelContext.

Definition at line 221 of file flat_file_context.cpp.

References CCompositeTextItem::GetItem(), CCompositeTextItem::GetItemCount(), CTextItemPanel::GetRootItem(), i, CTextPanelContext::m_Panel, and ITextItem::Traverse().

GetWorkDir()

wxString CFlatFileViewContext::GetWorkDir ( ) const

virtual

Implements IBioseqEditorCB.

Definition at line 760 of file flat_file_context.cpp.

References CTextPanelContext::m_WorkDir.

InitDrawStream()

void CFlatFileViewContext::InitDrawStream ( CDrawTextOStream &  stream, int  startLine  )

virtual

Reimplemented from CTextPanelContext.

Definition at line 833 of file flat_file_context.cpp.

References CDrawTextOStream::AddMarker(), CTextPosition::GetCol(), CTextBlock::GetEnd(), CTextPosition::GetRow(), CTextBlock::GetStart(), i, CTextBlock::IsEmpty(), m_MarkedSeq, and CTextBlock::ShiftRow().

IsEditingEnabled()

virtual bool CFlatFileViewContext::IsEditingEnabled ( ) const

inlinevirtual

Reimplemented from CTextPanelContext.

Definition at line 95 of file flat_file_context.hpp.

References m_BioseqEditor.

Referenced by CFlatFileLocusItem::CalcSize().

OnCollapseAllFeatures()

void CFlatFileViewContext::OnCollapseAllFeatures ( wxCommandEvent &  event )

protected

Definition at line 319 of file flat_file_context.cpp.

OnCollapseSeqBlocks()

void CFlatFileViewContext::OnCollapseSeqBlocks ( wxCommandEvent &  event )

protected

Definition at line 359 of file flat_file_context.cpp.

OnCollapseSequences()

void CFlatFileViewContext::OnCollapseSequences ( wxCommandEvent &  event )

protected

Definition at line 401 of file flat_file_context.cpp.

References CCompositeTextItem::GetItem(), CCompositeTextItem::GetItemCount(), CTextItemPanel::GetRootItem(), i, CTextItemPanel::Layout(), CTextPanelContext::m_Panel, ITextItem::Traverse(), CTextItemPanel::UpdateCaretPos(), and CCompositeTextItem::UpdatePositions().

OnEditBioseq()

static void CFlatFileViewContext::OnEditBioseq	(	objects::CBioseq_Handle &	bh,
		wxPoint	pos
	)

Definition at line 438 of file flat_file_context.cpp.

References CleanupSeparators(), CUICommandRegistry::CreateMenu(), CUICommandRegistry::GetInstance(), and Merge().

Referenced by CFlatFileLocusItem::OnHyperlinkClick().

OnExpandAll()

void CFlatFileViewContext::OnExpandAll ( wxCommandEvent &  event )

protected

Definition at line 417 of file flat_file_context.cpp.

References CTextItemPanel::GetRootItem(), CTextItemPanel::Layout(), CTextPanelContext::m_Panel, CCompositeTextItem::Traverse(), CTextItemPanel::UpdateCaretPos(), and CCompositeTextItem::UpdatePositions().

OnExpandAllFeatures()

void CFlatFileViewContext::OnExpandAllFeatures ( wxCommandEvent &  event )

protected

Definition at line 299 of file flat_file_context.cpp.

OnExpandSeqBlocks()

void CFlatFileViewContext::OnExpandSeqBlocks ( wxCommandEvent &  event )

protected

Definition at line 339 of file flat_file_context.cpp.

RegisterCommands()

void CFlatFileViewContext::RegisterCommands ( CUICommandRegistry &  cmd_reg, wxFileArtProvider &  provider  )

static

Definition at line 231 of file flat_file_context.cpp.

References kCollapseAllFeatures, kCollapseSeqBlocks, kCollapseSequences, kExpandAllFeatures, kExpandSeqBlocks, NcbiEmptyString, and CUICommandRegistry::RegisterCommand().

Referenced by CTextPanel::RegisterCommands().

RootInitialized()

void CFlatFileViewContext::RootInitialized ( )

virtual

Reimplemented from CTextPanelContext.

Definition at line 175 of file flat_file_context.cpp.

References CCompositeTextItem::GetItem(), CCompositeTextItem::GetItemCount(), CTextItemPanel::GetRootItem(), i, m_BioseqEditor, CTextPanelContext::m_Panel, ShowEditIcons(), and ITextItem::Traverse().

SetPanel()

void CFlatFileViewContext::SetPanel ( CTextItemPanel *  panel )

virtual

Reimplemented from CTextPanelContext.

Definition at line 188 of file flat_file_context.cpp.

References m_BioseqEditor, CTextPanelContext::m_Panel, and CTextPanelContext::SetPanel().

ShowEditIcons()

bool CFlatFileViewContext::ShowEditIcons

(

)

const

Definition at line 119 of file flat_file_context.cpp.

References m_BioseqEditor, and RunningInsideNCBI().

Referenced by GetLeftMargin(), and RootInitialized().

Member Data Documentation

m_BioseqEditor

CIRef<IBioseqEditor> CFlatFileViewContext::m_BioseqEditor

protected

Definition at line 119 of file flat_file_context.hpp.

Referenced by EditItem(), IsEditingEnabled(), RootInitialized(), SetPanel(), ShowEditIcons(), and ~CFlatFileViewContext().

m_CurBioseq

objects::CBioseq_Handle CFlatFileViewContext::m_CurBioseq

protected

Definition at line 118 of file flat_file_context.hpp.

Referenced by GetCurrentBioseq().

m_Formatter

CRef<objects::IFormatter> CFlatFileViewContext::m_Formatter

protected

Definition at line 108 of file flat_file_context.hpp.

Referenced by GetFormatter().

m_MarkedSeq

CTextBlock CFlatFileViewContext::m_MarkedSeq

protected

Definition at line 121 of file flat_file_context.hpp.

Referenced by FindSequence(), and InitDrawStream().

---

The documentation for this class was generated from the following files:

• include/gui/widgets/seq/flat_file_context.hpp
• src/gui/widgets/seq/flat_file_context.cpp