#include <util/debug/set.hpp>
Inherits std::set< K >.
Collaboration diagram for set< Key, Compare >:
Public Types | |
| typedef parent_type::size_type | size_type |
| typedef parent_type::key_type | key_type |
| typedef parent_type::value_type | value_type |
| typedef parent_type::const_iterator | const_iterator |
| typedef parent_type::iterator | iterator |
Public Member Functions | |
| checked_set () | |
| ~checked_set () | |
| checked_set (const this_type &m) | |
| this_type & | operator= (const this_type &m) |
| void | swap (this_type &m) |
| bool | operator== (const this_type &m) const |
| bool | operator< (const this_type &m) const |
| size_type | size () const |
| bool | empty () const |
| const_iterator | begin () const |
| const_iterator | end () const |
| const_iterator | find (const key_type &key) const |
| const_iterator | lower_bound (const key_type &key) const |
| const_iterator | upper_bound (const key_type &key) const |
| const_iterator_pair | equal_range (const key_type &key) const |
| iterator | begin () |
| iterator | end () |
| iterator | find (const key_type &key) |
| iterator | lower_bound (const key_type &key) |
| iterator | upper_bound (const key_type &key) |
| iterator_pair | equal_range (const key_type &key) |
| iterator_bool | insert (const value_type &val) |
| iterator | insert (iterator pos, const value_type &val) |
| void | erase (iterator pos) |
| size_type | erase (const key_type &key) |
| void | clear () |
Private Types | |
| typedef std::set< Key, Compare > | parent_type |
| typedef checked_set< Key, Compare > | this_type |
| typedef pair< typename parent_type::const_iterator, typename parent_type::const_iterator > | const_iterator_pair |
| typedef pair< typename parent_type::iterator, typename parent_type::iterator > | iterator_pair |
| typedef pair< typename parent_type::iterator, bool > | iterator_bool |
Private Member Functions | |
| void | RLock () const |
| void | RUnlock () const |
| void | WLock () const |
| void | WUnlock () const |
Private Attributes | |
| CAtomicCounter_WithAutoInit | m_WCounter |
| CAtomicCounter_WithAutoInit | m_RCounter |
Detailed Description
template<typename Key, typename Compare = less<Key>>
class set< Key, Compare >
Member Typedef Documentation
◆ const_iterator
| typedef parent_type::const_iterator set< Key, Compare >::const_iterator |
◆ const_iterator_pair
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private |
◆ iterator
◆ iterator_bool
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private |
◆ iterator_pair
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private |
◆ key_type
◆ parent_type
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private |
◆ size_type
◆ this_type
|
private |
◆ value_type
| typedef parent_type::value_type set< Key, Compare >::value_type |
Constructor & Destructor Documentation
◆ ~checked_set()
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inline |
Member Function Documentation
◆ begin() [1/2]
◆ begin() [2/2]
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Definition at line 135 of file set.hpp.
Referenced by CInt_fuzz::Add(), CLDS2_ObjectParser::AddBioseq(), CExportTableDlg::AddSourceToTable(), CSeqDBGiList::AddTaxIds(), CSeqDBNegativeList::AddTaxIds(), CVcfColumnSelectionPanel::AllAreChecked(), CTaxNRCriteria::Apply(), CSourceModParser::ApplyAllMods(), CRemoveStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CAddStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CRangeSet< CPairwiseAln::TPos >::begin(), limited_size_map< string, CRef< CSlot > >::begin(), CCassQuery::BindSet(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CBlastDbBioseqSource::CBlastDbBioseqSource(), CCharInSet::CCharInSet(), CFlatSeqLoc::CFlatSeqLoc(), CheckExpectedQuals(), CPrimeNumberClient::CheckStatus(), python::CSelectConnPool::Clear(), python::CConnection::close(), python::CTransaction::CloseOpenCursors(), CMsvcPrjProjectContext::CMsvcPrjProjectContext(), CProjBulderApp::CollectDep(), CSampleEditSaver::CommitTransaction(), CAddFluComments::ConcatIds(), CNAnnotFilter::Consume(), CDFamily::convergeTo(), CArgDescriptions::CPrintUsage::CPrintUsage(), python::CSelectConnPool::Create(), CCompareWithBiosample::CreateBiosampleUpdateWebService(), CClearKeywords::CreateControls(), CExportTableDlg::CreateControls(), CRemoveSeqFromAlignDlg::CreateControls(), CreateDllsList(), CProjBulderApp::CreateFeaturesAndPackagesFiles(), CSeqAnnotFromFasta::DetermineMasterIndex(), CConvertFeatDlg::DoesObjectAllQualsMatchFieldConstraint(), AlignmentUtility::DoLeaveNOut(), SMakeProjectT::DoResolveDefs(), MultipleAlignment::extractAlignedSubset(), CDFamily::extractFamily(), CAlignFormatUtil::ExtractSeqalignSetFromDiscSegs(), CCgiCookies::Find(), FindCompartments(), FindForwardOrfs(), SeqSwapper::findReplacements(), CInternalStopFinder::FindStartStopRanges(), CVDBAliasUtil::FindVDBPaths(), g_GetIntersection(), CGeneFinder::GeneMatchesXref(), CProjBulderApp::GenerateUnixProjects(), CCgiCookies::GetAll(), CFlatFileConfig::GetAllGenbankStrings(), CStructCommentSubpanel::GetAllLabels(), CSeqDBImpl::GetAllTaxIDs(), CSGSnpDS::GetAnnotNames(), CPkgManager::GetBasePkgs(), CTSE_LockSet::GetBestTSEs(), CScope_Impl::GetBioseqHandle(), CPSGDataLoader_Impl::GetCDDAnnotsOnce(), CAlignCollapser::GetCollapsedAlgnments(), CRemoveSequencesDlg::GetCommand(), CReorderSequencesDlg::GetCommand(), CVariationUtilities::GetCommonRepeatUnit(), CSeqDB::GetDBMetaData(), CPhyloTree::GetExplicitlySelected(), CPhyloTree::GetExplicitlySelectedAndNotCollapsed(), CLDS2_DataLoader::GetExternalRecords(), CValidator::CCacheImpl::GetFeatFromCacheMulti(), CBlockingQueue< TRequest >::GetHandle(), CProjectItemsTree::GetInternalDepends(), CSeqDBImpl::GetLeafTaxIDs(), CCassConnection::GetLocalPeersAddressList(), RowSourceTable::getMasterRows(), CNAUtils::GetNATrackInfo(), CGraphUtils::GetNearestLevel(), CClusterDBSource::GetNext(), SServerNotifications::GetNextNotification(), CProjectService::GetObjProjects(), CDataLoader::GetOrphanAnnotRecordsNA(), CClassTypeInfoBase::GetRegisteredModuleNames(), CPhyloTree::GetSelected(), CGridWidget::GetSelectedObjects(), CGridWidget::GetSelectedRows(), CGridWidget::GetSelection(), CMacroEngine::GetSynonymFilenames(), CPSG_TaskGroup::GetTask(), CSeqDBLMDBSet::GetTaxIdsForOids(), CSeqDBImpl::GetTaxIdsForSeqId(), variation::GetUniquePrimaryTranscriptId(), CArgAllow_Strings::GetUsage(), CArgAllow_Int8s::GetUsage(), CArgAllow_Integers::GetUsage(), CArgAllow_Doubles::GetUsage(), GetVDBScope(), CSeqScores::Init(), CProjBulderApp::InsertDep(), CStructFieldValuePanel::ListStructCommentFields(), CProjBulderApp::LoadDepGraph(), AlignmentCollection::mapRows(), CRemoveSequencesDlg::MatchConstraint(), CRBSubpanel::MatchConstraint(), minhash_query(), minhash_query2(), CStringConstraintSelect::OnApply(), CPhyloTreeWidget::OnCollapseToViewport(), CFindEditSequence::OnNext(), CAppPackagesDlg::OnOkClick(), CPaintSequence::OnPaint(), CBarcodeTool::OnRemoveKeyword(), CFieldSubpanel::OnSelectButton(), CSuspectProductRulesEditor::OnShowDiffs(), BlockModel::operator-(), CAnnot_CI::operator--(), operator<<(), CFastaReader::ParseGapLine(), CLocationListCtrl::PopulateIdListFromScope(), CUnculTaxTool::PreloadCache(), CRegEx::CRegXChar::Print(), CArgs::Print(), ShowHideManager::PrivateShowResidues(), CDataTool::ProcessData(), CVDBAliasUtil::ProcessMixedDBsList(), SeqSwapper::promotePendingRows(), CColumnarVCFReader::ReadHeader(), Messenger::RedrawMoleculesWithIdentifier(), CWGSMasterDescrSetter::RegisterCallbacks(), RemoveDuplicateGoTerms(), CReorderSequencesDlg::ReorderById(), CEditsSaver::ResetIds(), CAnnot_CI::Rewind(), CAgpFastaComparator::Run(), CAsnCacheTestApplication::Run(), variation::CVariationUtil::s_FindLocationProperties(), s_LimitDeflines(), s_MinhashSequences(), s_MinhashSequences2(), s_ProcessTaxIdFilters(), s_RegisterLocalDataLoader(), s_SetDeflineLeafs(), SAlignExtended::SAlignExtended(), CTextPanelContext::SelectItem(), CFindEditSequence::SetHighlights(), CMultiAligner::SetInputMSAs(), CNetStorageServer::SetParameters(), CSeqDBRangeList::SetRanges(), CDesktopCanvas::SetSelectedObjects(), CTextPanelContext::SetSelectedObjects(), ShowHideManager::ShowAlignedChains(), ShowHideManager::ShowAlignedDomains(), ShowHideManager::ShowAlignedOrAnnotatedDomains(), ShowHideManager::ShowDomainsWithHighlights(), CBarcodeTool::ShowReport(), ShowHideManager::ShowSelectedResidues(), CRNANameCompleter::Start(), CTaxonTextCompleter::Start(), SeqSwapper::swapSequences(), CMacroFunction_CreateProteinFeats::TheFunction(), NSearchFeatPanel::CTrackFeatSubtype::Track(), RowSourceTable::transferCDs(), TraverseAndRunTestCases(), CCmdAddSeqEntry::Unexecute(), CDataSource::UpdateAnnotIndex(), CPCRPrimersPanel::UpdateBioSourcePrimers(), CRemoveSequencesDlg::UpdateList(), CGtfAttributes::ValueOf(), SMakeProjectT::VerifyLibDepends(), CCassBioseqInfoTaskFetch::Wait1(), CCgiCookies::Write(), CNCBlobStorage::WriteDbInfo(), CFileCode::WriteSourceFile(), CEditObjectSeq_feat::x_AdjustCircularGene(), CBlobCacher::x_CacheNextFile(), CBlobCacher::x_CleanOrphanRecs(), CRangeSet< CPairwiseAln::TPos >::x_CombineWith(), CFeatureTableReader_Imp::x_CreateGenesFromCDSs(), CPhrap_Contig::x_CreateSeq_align(), CQueueDataBase::x_Dump(), CArgDependencyGroup::x_Evaluate(), CWriteDB_Impl::x_ExtractDeflines(), CDataSource::x_FindBestTSE(), CProjectLoadOptionPanel::x_Finish(), CCache< string, CRef< CTaxon3_reply > >::x_GetBaseWeight(), CAlgoToolManagerBase::x_GetDataLocker(), CDBLB_ServiceMapper::x_GetServer(), CVDBBlastUtil::x_GetSRARunAccessions(), CSeqDBImpl::x_GetTaxIdsForSeqId(), CGFFReader::x_MergeAttributes(), CArgDescriptions::x_PostCheck(), CArgDescriptions::x_PreCheck(), CBlastTabularInfo::x_PrintSubjectBlastNames(), CBlastTabularInfo::x_PrintSubjectSuperKingdoms(), CBlastTabularInfo::x_PrintSubjectTaxIds(), CAgpValidateReader::x_PrintTotals(), CExportStrategy::x_Process_SearchDb(), CMakeBlastDBApp::x_ProcessInputData(), CAsn2FastaApp::x_ProcessIStream(), CNewCleanup_imp::x_ProtGBQualBC(), CTraversalCodeGenerator::x_PruneEmptyNodes(), CSrcTablePrimerColumn::x_RemoveEmptyValues(), CNewCleanup_imp::x_RemovePopPhyBioSource(), CNewCleanup_imp::x_RemovePopPhyMolInfo(), CQuickLaunchList::x_Save(), CCleanupHugeAsnReader::x_SetBioseqHooks(), CCleanupHugeAsnReader::x_SetBioseqSetHooks(), CBlastTabularInfo::x_SetTaxInfoAll(), CRangeSet< CPairwiseAln::TPos >::x_TrimBefore(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CGtfWriter::xAssignFeatureAttributeGeneId(), and CObjectManager::~CObjectManager().
◆ checked_set() [1/2]
◆ checked_set() [2/2]
◆ clear()
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inline |
Definition at line 153 of file set.hpp.
Referenced by CInt_fuzz::Add(), BOOST_AUTO_TEST_CASE(), CGraphUtils::CalcGraphLevels(), CSGAlignmentDS::CalculateAlignmentScore(), CGoTermSortStruct::CGoTermSortStruct(), RowSourceTable::clear(), CAutodefFeatClausePanel::Clear(), CSelectionVisitor::Clear(), CHugeFileValidator::SGlobalInfo::Clear(), CRangeSet< CPairwiseAln::TPos >::clear(), CReportNode::clear(), CCgiCookies::Clear(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::clear(), limited_size_map< string, CRef< CSlot > >::clear(), python::CSelectConnPool::Clear(), CUsedTlsBases::ClearAll(), CFastaIdHandler::ClearIdCache(), CPhyloTree::ClearSelection(), CWriteDB_Volume::Close(), CPSGS_OSGAnnot::CreateRequests(), CSelectionVisitor::DeSelectObject(), CSeqAnnotFromFasta::DetermineMasterIndex(), DoesPatternMatchHighlightedResidues(), CDataSource::DropAllTSEs(), CServer_ConnectionPool::Erase(), CVariantDescriptors::FinalizeReading(), CUnculTaxTool::FindBioSource(), CCyclicDepends::FindCycles(), CCyclicDepends::FindCyclesNew(), CVDBAliasUtil::FindVDBPaths(), DTDParser::GenerateDataTree(), CFeatTableEdit::GenerateProteinAndTranscriptIds(), CSeqUtils::GetAssmAccs_Gi(), CAutoDef::GetAvailableModifiers(), CTSE_LockSet::GetBestTSEs(), CSeqDBImpl::GetDBTaxIds(), CDFamily::getDescendants(), CDataTrackUtils::GetFeatSubtypes(), CObjectIndex::GetMatches(), CClassTypeInfoBase::GetRegisteredModuleNames(), CRemoteBlast::GetSearchOptions(), CFeatureCheckPanel::GetSelected(), CVcfColumnSelectionPanel::GetSelectedInfoFields(), CPsiBlastIterationState::GetSeqIds(), GetTaxIdWithWindowMaskerSupport(), GetTreeNeighborhood(), CGtfAttributes::GetValues(), CBarcodeTool::GetValues(), CAutodefFeatClausePanel::Init(), SAutodefParams::Init(), CAutodefParamsPanel::Init(), CSearch< LEGACY, NHITS >::MakeOidSet(), CFindEditSequence::OnChange(), CFindEditSequence::OnClose(), CVcfRefSequencesPanel::OnDeselectAllBtnClick(), CAutodefFeatClausePanel::OnLeftDown(), CFindEditSequence::OnNext(), CBarcodeTool::OnRemoveKeyword(), CBarcodeTool::OnSelectAll(), CAutodefParamsPanel::OnSuppressFeatures(), CBarcodeTool::OnUnselectAll(), CRemoveSequencesDlg::OnUnselectAll(), CMacroParser::Parse(), CFastaReader::ParseGapLine(), CSourceModParser::ParseTitle(), CReaderRequestResult::ReleaseLocks(), CMacroStat::Reset(), CBioseqInfoRecord::Reset(), CValidError_imp::Reset(), CArgs::Reset(), CBlast4_get_windowmasked_taxids_reply_Base::Reset(), CLDS2_ObjectParser::ResetBlob(), CLDS2_Manager::ResetData(), CHitMatrixGraph::ResetGlyphSelection(), CSelectionVisitor::ResetObjectSelection(), CObjectStack::ResetPathHooks(), CObjectManager::RevokeAllDataLoaders(), CGapStatsApplication::RunNoCatch(), s_AnalyzeLibraryOrder(), s_GetAssmEquiv(), s_OldGetTaxIdWithWindowMaskerSupport(), s_ProcessTaxIdFilters(), CTextPanelContext::SelectItem(), SeqDB_ReadMemoryTaxIdList(), CLDS2_Manager::SetDbFile(), CSameConstraintMatcher::SetDesc(), CPhyloTree::SetExplicitlySelected(), CSameConstraintMatcher::SetFeat(), CFastaReader::SetGapLinkageEvidences(), CMultAlign::SetGenomic(), CGlyphContainer::SetHighlights(), CPhyloTree::SetLeavesExplicitlySelected(), CRelaxedLookupDlg::SetPubdesc(), CSearch< LEGACY, NHITS >::SetResult(), CTextPanelContext::SetSelectedObjects(), CLDS2_BioseqIds_Hook::SkipClassMember(), CLDS2_Annot_Hook::SkipObject(), CCassBioseqInfoTaskFetch::Wait1(), CIdMapperScope::x_AddMappings(), CWriteDB_IsamIndex::x_AddStringData(), CGeneModelTrack::x_AdjustSelector(), CNCMessageHandler::x_AssignCmdParams(), CBlobCacher::x_CacheNextRecord(), CNCActiveSyncControl::x_CheckSlotTheirSync(), CSampleEditSaver::x_CleanUp(), CHitMatrixDataSource::x_Clear(), CCompoundRWRegistry::x_Clear(), CEditSeqId::x_CollectChangedIds(), CRemoveGeneralId::x_CollectChangedIds(), CScopeTransaction_Impl::x_DoFinish(), CNCActiveSyncControl::x_DoPeriodicSync(), CTracebackSearchTestFixture::x_FindUsedGis(), CNAUtils::x_GetAllGIs(), CNSTServiceRegistry::x_GetMetadataServices(), CRangeSet< CPairwiseAln::TPos >::x_IntersectWith(), CTL_CursorResult::x_InvalidateDescriptors(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CFeatureSearchForm::x_LoadSettings(), CMultiAlignView::x_OnSetSelection(), CPhyTreeView::x_OnSetSelection(), CColumnarVCFReader::x_ResetInfo(), CWriteDB_Impl::x_ResetSequenceData(), CFeatureSearchJob::x_SearchFeatures(), CSequenceSearchJob::x_SearchSequence(), CHitMatrixGraph::x_SelectByPoint(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CCleanupHugeAsnReader::x_SetBioseqHooks(), CCleanupHugeAsnReader::x_SetBioseqSetHooks(), CBlastTabularInfo::x_SetTaxInfoAll(), CMiscSeqTable::x_SetTopSeqEntryForActions(), CWindowManagerService::x_ShutDownToolBars(), CNCActiveSyncControl::x_StartScanSlots(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CBamLoadOptionPanel::x_ValidateInput(), CMergeTree::~CMergeTree(), CObjectManager::~CObjectManager(), and CWriteDB_IsamIndex::~CWriteDB_IsamIndex().
◆ empty()
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Definition at line 133 of file set.hpp.
Referenced by CDisambiguator::Add(), CInt_fuzz::Add(), CMergeTree::AddEquiv(), CBlastQueryFilteredFrames::AddSeqLoc(), CLDS2_ObjectParser::BeginBlob(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CGraphUtils::CalcGraphLevels(), CSGAlignmentDS::CalculateAlignmentScore(), CAlignStrandSorter::CAlignStrandSorter(), CEditObjectSeq_feat::CanClose(), CCloneConcordancySorter::CCloneConcordancySorter(), CDbvarClinicalAsstSorter::CDbvarClinicalAsstSorter(), CDbvarPilotSorter::CDbvarPilotSorter(), CDbvarQualitySorter::CDbvarQualitySorter(), CDbvarSamplesetTypeSorter::CDbvarSamplesetTypeSorter(), CDbvarValidationSorter::CDbvarValidationSorter(), CFlatSeqLoc::CFlatSeqLoc(), CGRCStatusSorter::CGRCStatusSorter(), variation::CVariationUtil::CheckExonBoundary(), python::CSelectConnPool::Clear(), impl::CDriverContext::CloseOldIdleConns(), python::CTransaction::CloseOpenCursors(), CSeq_loc_Mapper_Base::CollectSynonyms(), CStructCommentFieldPanel::CompleteStructCommentFields(), ConvertRawToDeltaByNsCommand_impl(), ConvertRawToDeltaByNsHugeFileCmd_impl(), python::CSelectConnPool::Create(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CTaskCmdLineArgs::CTaskCmdLineArgs(), CSelectionVisitor::DeSelectObject(), SMakeProjectT::DoResolveDefs(), CAnnotationASN1::CImplementationData::DumpEvidence(), CBlastQueryFilteredFrames::Empty(), CWinMaskUtil::CIdSet_SeqId::empty(), CRangeSet< CPairwiseAln::TPos >::empty(), CCgiCookies::Empty(), CAnnot_CI::empty(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::empty(), limited_size_map< string, CRef< CSlot > >::empty(), CCmdChangeProjectItem::Execute(), CGBObjectLoader::Execute(), CBlastDBExtractor::ExtractLeafTaxIds(), CAlignCollapser::FilterAlignments(), SeqSwapper::findReplacements(), CInternalStopFinder::FindStartStopRanges(), g_GetIntersection(), NSearchFeatPanel::GatherFeatures(), CFileCode::GenerateCPP(), CFileCode::GenerateHPP(), CTSE_LockSet::GetBestTSEs(), CScope_Impl::GetBioseqHandle(), CWGSClient::GetBioseqInfo(), CDataLoader::GetExternalAnnotRecords(), CLDS2_DataLoader::GetExternalRecords(), CBlockingQueue< TRequest >::GetHandle(), CNAUtils::GetNATrackInfo(), SServerNotifications::GetNextNotification(), CDataLoader::GetOrphanAnnotRecordsNA(), GetProteinWeights(), CRemoveSeqId::GetRemoveOriginalIdCommand(), SSatInfoEntry::GetSecureConnection(), CPSG_TaskGroup::GetTask(), CSeqDBImpl::GetTaxIdsForSeqId(), GetTaxIdWithWindowMaskerSupport(), CTSE_Info::GetTopLevelSeq_submit(), CArgAllow_Strings::GetUsage(), CPsiBlastIterationState::HasConverged(), CSelectionVisitor::HasSelectedObjects(), CPSG_TaskGroup::HasTasks(), CCodeGenerator::HaveGenerateTypes(), CProjBulderApp::InsertDep(), SServerNotifications::InterruptWait(), CMergeTree::IsEmpty(), CArgs::IsEmpty(), CmRNACDSLinker::LinkByLabel(), CmRNACDSLinker::LinkByLabelAndLocation(), CmRNACDSLinker::LinkByOverlap(), CmRNACDSLinker::LinkByProduct(), CBlastQueryFilteredFrames::ListFrames(), CStructFieldValuePanel::ListStructCommentFields(), CWGSMasterDescrSetter::Loaded(), minhash_query(), minhash_query2(), ModelMethod(), CMAViewManager::NeedAnchorPanel(), CAlignCompare::NextGroup(), CSuspectProductRulesEditor::OnDeleteRules(), CPSGS_SNPProcessor::OnGotAnnotation(), CFindEditSequence::OnNext(), CBarcodeTool::OnRemoveKeyword(), CFieldSubpanel::OnSelectButton(), CPubseqGatewayCacheBlobProp::Open(), CFastaReader::ParseGapLine(), CRegEx::CRegXChar::Print(), CObjectsSniffer::ProbeAny(), CDataTool::ProcessData(), CPSGS_OSGResolveBase::ProcessResolveReply(), CVariantDescriptors::PushBack(), SServerNotifications::RegisterServer(), CHugeFileValidator::ReportGlobalErrors(), CEditsSaver::ResetIds(), CAgpFastaComparator::Run(), SGridWorkerNodeImpl::Run(), CWinMaskDemoApplication::Run(), CPrimeCacheApplication::Run(), CProjBulderApp::Run(), CGapStatsApplication::RunNoCatch(), s_FormatCall(), s_HasTag(), s_MinhashSequences(), s_MinhashSequences2(), s_PopulateExtSet(), s_ReportDuplicateIds(), CPSGS_OSGAnnot::SendReplies(), CTextSubpanel::SetClusters(), CFieldSubpanel::SetClusters(), CStructCommentSubpanel::SetClusters(), CMultiAligner::SetInputMSAs(), CSeqDBVol::SetOffsetRanges(), CDesktopCanvas::SetSelectedObjects(), CTextPanelContext::SetSelectedObjects(), CRNANameCompleter::Start(), CTaxonTextCompleter::Start(), sx_PopLastNewPtrMultiple(), ThrowIfInvalidTask(), CDataSource::UpdateAnnotIndex(), SMakeProjectT::VerifyLibDepends(), CCassBioseqInfoTaskFetch::Wait1(), CBlockingQueue< TRequest >::Withdraw(), CGeneModelTrack::x_AddMainFeaturesLayout(), CSatInfoSchema::x_AddSatInfoEntry(), CSegmentMapTrack::x_AddSegmentMapLayout(), CEditObjectSeq_feat::x_AdjustCircularGene(), CPrimeCacheApplication::x_CacheSeqEntry(), CMiscSeqTable::x_CheckDuplicateIds(), CImportFeatTable::x_CreateCommand(), CFeatureTableReader_Imp::x_CreateGenesFromCDSs(), CVCFVariantsBase::x_DeserializeDescr_Range(), CQueueDataBase::x_Dump(), CMergeTree::x_FindAfters(), CDataSource::x_FindBestTSE(), CMergeTree::x_FindLeafs(), CMultiAligner::x_FindQueryClusters(), CProjectLoadOptionPanel::x_Finish(), CAnnot_Collector::x_FoundAllNamedAnnotAccessions(), CSGAlignmentJob::x_GetAlignments(), CCache< string, CRef< CTaxon3_reply > >::x_GetBaseWeight(), CGridWidget::x_GetSelectedRows(), CBlockingQueue< CRef< CStdRequest > >::x_GetSemPred(), CSeqDBImpl::x_GetTaxIdsForSeqId(), variation::CVariationUtil::CVariantPropertiesIndex::x_Index(), CCassBioseqInfoTaskFetch::x_InheritanceRequired(), CRNANameCompleter::x_Init(), CTaxonTextCompleter::x_Init(), CSeq_align_Mapper_Base::x_Init(), CFeatureTrack::x_InitGlyphs_Recursive(), CAnnot_CI::x_Initialize(), CMergeTree::x_LinkNodes(), CFeaturePanel::x_LoadSettings(), CSelectionVisitor::x_NeedUpdate(), CMergeTree::x_Print(), CBlastTabularInfo::x_PrintSubjectBlastNames(), CBlastTabularInfo::x_PrintSubjectSuperKingdoms(), CBlastTabularInfo::x_PrintSubjectTaxIds(), CPrimeCacheApplication::x_Process_Ids(), CMakeBlastDBApp::x_ProcessInputData(), CAsn2FastaApp::x_ProcessIStream(), CNewCleanup_imp::x_ProtGBQualBC(), CMergeTree::x_RemoveChild(), CCleanupApp::x_RemoveDuplicateFeatures(), CSrcTablePrimerColumn::x_RemoveEmptyValues(), CMergeTree::x_RemoveParent(), CTSE_Split_Info::x_SetContainedSeqIds(), CGapsEditor::x_SetGapParameters(), CBlastTabularInfo::x_SetTaxInfoAll(), CFeatureGraph::x_StartJob(), CRangeSet< CPairwiseAln::TPos >::x_TrimBefore(), CRangeSet< CPairwiseAln::TPos >::x_TrimStartingWith(), CMergeTree::x_UnLinkNodes(), CScope_Impl::x_UpdateProcessedNAs(), CAutodefFeatClausePanel::x_UpdateSuppressedFeatureTypeList(), CNCActiveSyncControl::x_WaitForExecutingTasks(), CGtfReader::xPropagateQualToParent(), python::CConnection::~CConnection(), and CObjectManager::~CObjectManager().
◆ end() [1/2]
◆ end() [2/2]
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Definition at line 136 of file set.hpp.
Referenced by CDockContainer::ActivateClients(), CArgs::Add(), CServer_ConnectionPool::Add(), CLDS2_ObjectParser::AddBioseq(), CExportTableDlg::AddCdsGeneMrnaTable(), CScopeTransaction_Impl::AddEditSaver(), CDataTypeModule::AddImportRef(), AddMasterDescr(), CWGSDb_Impl::AddMasterDescr(), CArgDescriptions::AddNegatedFlagAlias(), CPackString::AddNew(), CGBProjectHelper::AddProjectItemsFromRID(), CSAM_CIGAR_Formatter::AddRow(), CExportTableDlg::AddSourceToTable(), CSeqDBGiList::AddTaxIds(), CSeqDBNegativeList::AddTaxIds(), CWindowManagerService::AddToolBarContext(), CFileCode::AddType(), ResidueProfiles::adjustConsensusAndGuide(), CVcfColumnSelectionPanel::AllAreChecked(), CCyclicDepends::AnalyzeProjItemNew(), CSymResolver::Append(), CTaxNRCriteria::Apply(), CConvertDescToFeatComment::apply(), CConvertDescToFeatSource::apply(), CConvertDescToFeatPub::apply(), CConvertDescToFeatPubConstraint::apply(), CSourceModParser::ApplyAllMods(), CRemoveStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CAddStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CPCRSetList::AreSetsUnique(), CCassQuery::BindSet(), BOOST_AUTO_TEST_CASE(), CAlignCompare::SAlignment::BreakOnBoundaries(), WSDLParser::BuildDataTree(), CSGAlignmentDS::CalculateAlignmentScore(), CChainer::CChainerImpl::CalculateSpliceWeights(), CGenerateIncludesCallback::Call(), CGenerateStoredArgVariablesCallback::Call(), CGenerateStoredArgInitializerCallback::Call(), CBlastDbBioseqSource::CBlastDbBioseqSource(), CFlatSeqLoc::CFlatSeqLoc(), variation_ref::CVariationUtil::CheckExonBoundary(), CheckExpectedQuals(), CAgpValidateReader::CIdsNotInAgp::CheckIds(), pub_report::CheckRefs(), CBarcodeTool::CheckRow(), CPrimeNumberClient::CheckStatus(), CSimpleDictionary::CheckWord(), CRemoveSequencesDlg::ChooseSequence(), python::CSelectConnPool::Clear(), python::CConnection::close(), impl::CDriverContext::CloseOldIdleConns(), python::CTransaction::CloseOpenCursors(), CMacroEditorContext::CMacroEditorContext(), CMsvcPrjProjectContext::CMsvcPrjProjectContext(), CPhyloTreeDataSource::CollapseByDistance(), CProjBulderApp::CollectDep(), CProjBulderApp::CollectLibToLibDependencies(), CSampleEditSaver::CommitTransaction(), CAddFluComments::ConcatIds(), CNAnnotFilter::Consume(), CDFamily::convergeTo(), CCdsToMatPeptide::ConvertInner(), CRemoveFeaturesDlg::CountOrphanedProteins(), CArgDescriptions::CPrintUsage::CPrintUsage(), CCompareWithBiosample::CreateBiosampleUpdateWebService(), CProjBulderApp::CreateCheckList(), CClearKeywords::CreateControls(), CExportTableDlg::CreateControls(), CRemoveSeqFromAlignDlg::CreateControls(), CreateDllsList(), CProjBulderApp::CreateFeaturesAndPackagesFiles(), XSDParser::CreateTmpEmbeddedName(), CRNANameCompleter::CRNANameCompleter(), CTaskCmdLineArgs::CTaskCmdLineArgs(), CTaxonTextCompleter::CTaxonTextCompleter(), CMSPeak::CullIterate(), CArgDescriptions::Delete(), CPkgManager::DependsOn(), CSelectionVisitor::DeSelectObject(), CSeqAnnotFromFasta::DetermineMasterIndex(), CConvertFeatDlg::DoesObjectAllQualsMatchFieldConstraint(), CSameConstraintMatcher::DoesTextMatch(), AlignmentUtility::DoLeaveNOut(), SMakeProjectT::DoResolveDefs(), CPaintSequence::DrawTextCell(), CRangeSet< CPairwiseAln::TPos >::end(), limited_size_map< string, CRef< CSlot > >::end(), CRangeSet< CPairwiseAln::TPos >::end_nc(), CLDS2_ObjectParser::EndBlob(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::erase(), CArgs::Exist(), CArgDescriptions::Exist(), MultipleAlignment::extractAlignedSubset(), CDFamily::extractFamily(), CAnnotationASN1::ExtractModels(), CAlignFormatUtil::ExtractSeqalignSetFromDiscSegs(), CTrackUtils::ExtractTrackConfig(), CDataTrackUtils::FeatSubtypes2TrackSubtypes(), CDataType::FileName(), limited_size_map< string, CRef< CSlot > >::find(), CCgiCookies::Find(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), CEditingActionDescLocalId::Find(), CEditingActionDescComment::Find(), CSourceModParser::FindAllMods(), CGFFReader::SRecord::FindAttribute(), SeqSwapper::findBestPairings(), FindCompartments(), CChainer::CChainerImpl::FindContainedAlignments(), CSeq_loc_CI_Impl::FindInnerEquivSet(), CSourceModParser::FindMod(), SeqSwapper::findReplacements(), CInternalStopFinder::FindStartStopRanges(), CVDBAliasUtil::FindVDBPaths(), CFlatXrefQVal::Format(), fta_if_wgs_acc(), CGeneFinder::GeneMatchesXref(), DTDParser::GenerateDataTree(), CCodeGenerator::GenerateModuleCPP(), CCodeGenerator::GenerateModuleHPP(), CProjBulderApp::GenerateUnixProjects(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::get(), CCgiCookies::GetAll(), CFlatFileConfig::GetAllGenbankStrings(), CStructCommentSubpanel::GetAllLabels(), CSeqDBImpl::GetAllTaxIDs(), CSGSnpDS::GetAnnotNames(), CPkgManager::GetBasePkgs(), CSeqAnnotFromFasta::GetBlocksFromCounts(), CAlignCollapser::GetCollapsedAlgnments(), CConvertCdsToMiscFeat::GetCommand(), CEditHistory::GetCommand(), CFixForTransSplicing::GetCommand(), CFuseFeaturesDlg::GetCommand(), CRmDupFeaturesDlg::GetCommand(), CRemoveSequencesDlg::GetCommand(), CReorderSequencesDlg::GetCommand(), CUnculTaxTool::GetCommandFromValuesTable(), CAsnViewContext::GetCurrentSelection(), CFlatFileViewContext::GetCurrentSelection(), GetDuplicateFeaturesForRemoval(), CPhyloTree::GetExplicitlySelected(), CPhyloTree::GetExplicitlySelectedAndNotCollapsed(), CLDS2_DataLoader::GetExternalRecords(), CValidator::CCacheImpl::GetFeatFromCacheMulti(), variation::GetFocusLocusIDs(), CProjectItemsTree::GetInternalDepends(), CFeatList::GetItem(), CSeqDBImpl::GetLeafTaxIDs(), CCassConnection::GetLocalPeersAddressList(), CAnnotMapping_Info::GetMappedSeq_align(), RowSourceTable::getMasterRows(), CSourceModParser::GetMods(), CGraphUtils::GetNearestLevel(), CRNANameCompleter::GetNext(), CTaxonTextCompleter::GetNext(), CSeqEntrySource::GetNext(), CClusterDBSource::GetNext(), CProjectService::GetObjProjects(), CDataLoader::GetOrphanAnnotRecordsNA(), CClassTypeInfoBase::GetRegisteredModuleNames(), CTableDataSeq_table::GetRowLabel(), CPhyloTree::GetSelected(), CTextPanelContext::GetSelectedObjects(), CGridWidget::GetSelectedObjects(), CGridWidget::GetSelectedRows(), CGridWidget::GetSelection(), CViewGraphic::GetSelection(), CPhyloTree::GetSelState(), COSGServiceMapper::GetServerOptions(), GetSortedFeatList(), CMacroEngine::GetSynonymFilenames(), CSeqDBLMDBSet::GetTaxIdsForOids(), CSeqDBImpl::GetTaxIdsForSeqId(), CNcbiTestApplication::GetTestResultString(), GetTreeNeighborhood(), variation::GetUniquePrimaryTranscriptId(), CArgAllow_Strings::GetUsage(), CPsiBlastIterationState::HasConverged(), CNCBlobAccessor::HasPutSucceeded(), CScopeTransaction_Impl::HasScope(), CProjectItem::HasTag(), HasWGSMasterMark(), HighlightResidues(), CCorrectIntervalOrder::Init(), CRemoveFeaturesDlg::Init(), CRemoveGeneXrefs::Init(), CSuppressGenes::Init(), CSeqScores::Init(), CProjBulderApp::InsertDep(), CNetStorageServer::IsAdminClientName(), CProjBulderApp::IsAllowedProjectTag(), CMsvcSite::IsBanned(), RowSourceTable::isCDInScope(), CTextPanelContext::IsItemSelected(), CNSTServiceRegistry::IsKnown(), CDataLoader::IsProcessedNA(), CMsvcSite::IsProvided(), CNcbiTestApplication::IsTestToFix(), CmRNACDSLinker::LinkByLabel(), CmRNACDSLinker::LinkByLabelAndLocation(), CmRNACDSLinker::LinkByOverlap(), CmRNACDSLinker::LinkByProduct(), ListOrphanProteins(), CFeatureTypePanel::ListPresentFeaturesFirst(), CStructFieldValuePanel::ListStructCommentFields(), CCompoundRWRegistry::LoadBaseRegistries(), CDataTool::LoadDefinitions(), CProjBulderApp::LoadDepGraph(), CWGSMasterDescrSetter::Loaded(), CFileLoadWizard::LoadFormats(), CPackString::Locate(), limited_size_map< string, CRef< CSlot > >::lower_bound(), CUniqueLabelGenerator::MakeUniqueLabel(), AlignmentCollection::mapRows(), BlockModel::mask(), CSeq_id_Which_Tree::Match(), CAlignFilter::Match(), CRemoveSequencesDlg::MatchConstraint(), CRBSubpanel::MatchConstraint(), CSelectionEvent::MatchLocWithId(), minhash_query(), minhash_query2(), CMAViewManager::NeedAnchorPanel(), CSeqDBLMDB::NegativeTaxIdsToOids(), CMacroFlowEditor::OnAppendClick(), CStringConstraintSelect::OnApply(), CPhyloTreeWidget::OnCollapseToViewport(), CSuspectProductRulesEditor::OnDeleteRules(), CGrid::OnGridLabelRightClick(), CAppPackagesDlg::OnOkClick(), CAppPackagesDlg::OnPackageSelected(), CBarcodePanel::OnPaint(), CPaintSequence::OnPaint(), CBarcodeTool::OnRemoveKeyword(), CBarcodeTool::OnSelectAll(), CFilterColumnsDlg::OnSelectBtnClick(), CStructCommentSubpanel::OnSelectButton(), CSequesterSets::OnSequester(), CSuspectProductRulesEditor::OnShowDiffs(), CAppDialogs::OpenViewlDialog(), CCharInSet::operator()(), PLibExclude::operator()(), PSourcesExclude::operator()(), visitor_string_query::operator()(), CAnnot_CI::operator++(), BlockModel::operator-(), CAnnot_CI::operator=(), limited_size_map< string, CRef< CSlot > >::operator[](), CArgs::operator[](), CRemoveProteins::OrphanedProteins(), CPackString::Pack(), PLibExclude::PLibExclude(), PopulateEntry(), CAdjustFeaturesForGaps::PopulateFeatureList(), CLocationListCtrl::PopulateIdListFromScope(), CPSG_TaskGroup::PostFinished(), CGnomonAnnotator::Predict(), CUnculTaxTool::PreloadCache(), CNSClient::Print(), CRegEx::CRegXChar::Print(), CArgs::Print(), ShowHideManager::PrivateShowResidues(), CTable2AsnStructuredCommentsReader::ProcessComments(), CVDBAliasUtil::ProcessMixedDBsList(), XSDParser::ProcessNamedTypes(), SeqSwapper::promotePendingRows(), PSourcesExclude::PSourcesExclude(), CVariantDescriptors::PushBack(), CSimpleDictionary::Read(), CGFFReader::Read(), readGFF3(), CColumnarVCFReader::ReadHeader(), CNCPeriodicSync::ReConfig(), CSequesterSets::RecursiveCollectSets(), Messenger::RedrawMoleculesWithIdentifier(), CWGSMasterDescrSetter::RegisterCallbacks(), CAllOtherFeaturesTrack::ReinitNASubtracks(), CRemoveFeaturesDlg::RemoveDuplicateFeatures(), RemoveDuplicateGoTerms(), CRemoveFeaturesDlg::RemoveOrphansRenormalizeNucProtSets(), CWindowManagerService::RemoveToolBarContext(), CReorderSequencesDlg::ReorderById(), NWinHook::CHookedFunction::ReplaceInOneModule(), CEditsSaver::ResetIds(), CGeneFinder::ResolveGeneXref(), CAgpFastaComparator::Run(), CWinMaskDemoApplication::Run(), CSampleNetScheduleNode::Run(), s_AnalyzeLibraryOrder(), s_CleanupOrgModAndSubSourceOther_helper(), s_CollectAllLeaves(), s_EliminateDuplicates(), variation::CVariationUtil::s_FindLocationProperties(), s_FindNextOffset(), s_GetBioseqValues(), s_HasUnprocessedCdregions(), s_IncludeDefline_NegativeTaxid(), s_IncludeDefline_Taxid(), s_IncludeDeflineTaxid(), s_Initialize(), s_IsAsmAccEquiv(), s_LimitDeflines(), s_MakeGroupsForUniqueValues(), s_MinhashSequences(), s_MinhashSequences2(), s_MoveNonDuplicatedItems(), s_PrintTree(), s_ProcessTaxIdFilters(), s_RegisterLocalDataLoader(), s_RemoveDependentItems(), s_SetDeflineLeafs(), SAlignExtended::SAlignExtended(), SeqTree::selectByRowID(), CTextPanelContext::SelectItem(), CCompareSeqRegions::SelectMatches(), set_contains(), CArgDescriptions::SetConstraint(), CArgDescriptions::SetErrorHandler(), CClickableSortUniqueCount::SetExpandedNodes(), CMacroFlowEditor::SetExpandedNodes(), CPhyloTree::SetExplicitlySelected(), CFilterColumnsDlg::SetGridAdapter(), CFindEditSequence::SetHighlights(), CMultiAligner::SetInputMSAs(), CObjectManager::SetLoaderOptions(), CNetStorageServer::SetParameters(), CRelaxedLookupDlg::SetPubdesc(), CSeqDBRangeList::SetRanges(), CGridWidget::SetSelection(), CPhyloTree::SetSelection(), CRBSubpanel::SetSubsets(), CNcbiTestApplication::SetTestErrored(), CThreadPool_Impl::SetThreadIdle(), IBISAnnotateDialog::SetupGUIControls(), CBlockingQueue< TRequest >::SetUserPriority(), ShowHideManager::ShowAlignedChains(), ShowHideManager::ShowAlignedDomains(), ShowHideManager::ShowAlignedOrAnnotatedDomains(), ShowHideManager::ShowDomainsWithHighlights(), CBarcodeTool::ShowReport(), ShowHideManager::ShowSelectedResidues(), CMSPeak::SmartCull(), SNetScheduleExecutorImpl::SNetScheduleExecutorImpl(), CRNANameCompleter::Start(), CTaxonTextCompleter::Start(), ColumnResidueProfile::sumUpColumnWeightsByRow(), SeqSwapper::swapSequences(), CThreadedApp::TestApp_DelayedStartSyncPoint(), CTestAction::TestOID(), ThrowIfInvalidTask(), NSearchFeatPanel::CTrackFeatSubtype::Track(), RowSourceTable::transferCDs(), CAlignTabExportPage2::TransferDataToWindow(), MarkupCappedEst::transform_align(), MarkupTrustedGenes::transform_align(), TraverseAndRunTestCases(), ResidueProfiles::traverseColumnsOnMaster(), CAgpErrEx::TreatAsError(), TreeConvert2ContainerPartial(), CFeatList::TypeValid(), CCmdAddSeqEntry::Unexecute(), CPCRPrimersPanel::UpdateBioSourcePrimers(), UpdateDensegAlignment(), CRemoveSequencesDlg::UpdateList(), CRBSubpanel::UpdateList(), CSymbolGuard::UpdateSymbols(), variation::ValidExonTerminal(), CArgAllow_Strings::Verify(), CArgAllowGeneticCodeInteger::Verify(), SMakeProjectT::VerifyLibDepends(), CEvent::Visit(), CCassBioseqInfoTaskFetch::Wait1(), CNSClientsRegistry::WasGarbageCollected(), CBlockingQueue< TRequest >::Withdraw(), CNCServer::WriteAppSetup(), CNCBlobStorage::WriteDbInfo(), CSourceFeatureItem::x_AddQuals(), CConvertFeatDlg::x_AddUnverified(), CBlobCacher::x_CacheMapRecs(), CBlobCacher::x_CacheNextFile(), CBlobCacher::x_CacheNextRecord(), CMiscSeqTable::x_CheckDuplicateIds(), CNCActiveSyncControl::x_CheckSlotOurSync(), CBlobCacher::x_CleanOrphanRecs(), CRangeSet< CPairwiseAln::TPos >::x_CombineWith(), CRangeSet< CPairwiseAln::TPos >::x_CombineWithAndKeepAbutting(), CCompareSeq_locs::x_Compare(), CPSGS_Dispatcher::x_ConcludeIDGetNARequestStatus(), CArgDescriptions::x_CreateArg(), CFeatureTableReader_Imp::x_CreateGenesFromCDSs(), CObjConvProfile::x_CreateRelatedMap(), CPhrap_Contig::x_CreateSeq_align(), CVCFVariantsBase::x_DeserializeDescr_Range(), CNCMessageHandler::x_DoCmd_GetBListNext(), CQueueDataBase::x_Dump(), CWriteDB_Impl::x_ExtractDeflines(), CGFFReader::x_FeatureID(), CArgs::x_Find(), CArgDescriptions::x_Find(), CDataSource::x_FindBestTSE(), CCorrectGenesDialog::x_FindExactMatches(), x_FindLatestSequence(), CCorrectGenesDialog::x_FindNonExactMatches(), CMultiAligner::x_FindQueryClusters(), CProjectLoadOptionPanel::x_Finish(), CPkgManager::x_GetBasePkgs(), CTL_LangCmd::x_GetDynamicID(), CMacroFeatsOnSeqPanel::x_GetFeatureChoices(), CScriptPanel::x_GetInsertIndex(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CDBLB_ServiceMapper::x_GetServer(), CVDBBlastUtil::x_GetSRARunAccessions(), CSeqDBImpl::x_GetTaxIdsForSeqId(), CGapStatsApplication::x_IncludeGapType(), variation::CVariationUtil::CVariantPropertiesIndex::x_Index(), CArgDescriptions::x_IsMultiArg(), CDataType::x_IsSavedName(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), CValidError_imp::x_IsSuppressed(), CFastaIdHandler::x_IsUniqueIdHandle(), CAnnot_CI::x_IsValid(), CAddFeatureBetweenDlg::x_ListFeatures(), CBulkOtherAddPanel::x_ListFeatures(), CAlignOtherAddPanel::x_ListFeatures(), CGFFReader::x_MergeAttributes(), CNAUtils::x_NAIdMatchesGI(), CPSGS_AnnotProcessor::x_OnNamedAnnotData(), CPSGS_AnnotProcessor::x_OnNamedAnnotError(), CQueueDataBase::x_Open(), CGFFReader::x_ParseAlignRecord(), CMacroParser::x_ParseFunctionCall(), CGC_Assembly_Parser::x_ParseGCSequence(), CNAUtils::x_ParseNAMetaData(), CCassBioseqInfoTaskFetch::x_PopulateRecord(), CArgDescriptions::x_PostCheck(), CArgDescriptions::x_PreCheck(), CNgAlignApp::x_PrintNoHitList(), CAgpValidateReader::x_PrintTotals(), CExportStrategy::x_Process_SearchDb(), CMakeBlastDBApp::x_ProcessInputData(), CFilterColumnsDlg::x_ProcessSelectionPattern(), CNewCleanup_imp::x_ProtGBQualBC(), CCleanupHugeAsnReader::x_RecordFeatureId(), CAllOtherFeaturesTrack::x_ReinitSubtracks(), CFlatGatherer::x_RemoveDupComments(), CSrcTablePrimerColumn::x_RemoveEmptyValues(), CQuickLaunchList::x_Save(), CCleanupHugeAsnReader::x_SetBioseqHooks(), CCleanupHugeAsnReader::x_SetBioseqSetHooks(), CPhyloTree::x_SetSelState(), CBlastTabularInfo::x_SetTaxInfoAll(), CFeatureGraph::x_StartJob(), CRangeSet< CPairwiseAln::TPos >::x_Subtract(), CRangeSet< CPairwiseAln::TPos >::x_TrimStartingWith(), CUpdateMultiSeq_Dlg::x_UpdateAlignmentPanel(), CSeqTableGridPanel::x_UpdateCollapsedRow(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CValidError_bioseq::x_ValidateMultiplePubs(), CFeatTableEdit::xAddTranscriptAndProteinIdsToMrna(), CFeatTableEdit::xAddTranscriptAndProteinIdsToUnmatchedMrna(), CGtfWriter::xAssignFeatureAttributeGeneId(), CGvfWriter::xAssignFeatureAttributes(), CGff3Writer::xAssignFeatureAttributesQualifiers(), CGtfWriter::xAssignFeatureAttributeTranscriptId(), CGtfReader::xFeatureAddQualifiers(), CGtfReader::xFeatureSetQualifiers(), and CSrcWriter::xGetOrderedFieldNames().
◆ equal_range() [1/2]
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◆ equal_range() [2/2]
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Definition at line 140 of file set.hpp.
Referenced by CFeatureTableReader_Imp::x_CreateGenesFromCDSs().
◆ erase() [1/2]
◆ erase() [2/2]
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Definition at line 151 of file set.hpp.
Referenced by CCyclicDepends::AnalyzeProjItemNew(), BOOST_AUTO_TEST_CASE(), CEditObjectSeq_feat::CanClose(), CBlastnAppArgs::CBlastnAppArgs(), CBlastnVdbAppArgs::CBlastnVdbAppArgs(), CBarcodeTool::CheckRow(), CPrimeNumberClient::CheckStatus(), CNCActiveSyncControl::CmdFinished(), CPhyloTreeDataSource::CollapseByDistance(), python::CSelectConnPool::Create(), CArgDescriptions::Delete(), CUsedTlsBases::Deregister(), CClassTypeInfoBase::Deregister(), CSelectionVisitor::DeSelectObject(), python::CSelectConnPool::Destroy(), python::CTransaction::DestroyCursor(), python::CConnection::DestroyTransaction(), CDisambiguator::Disambiguate(), CLDS2_ObjectParser::EndBlob(), limited_size_map< string, CRef< CSlot > >::erase(), CCodeGenerator::ExcludeTypes(), CDataTrackUtils::FeatSubtypes2TrackSubtypes(), FindForwardOrfs(), SeqSwapper::findReplacements(), CInternalStopFinder::FindStartStopRanges(), CFileCode::GenerateCode(), CBlockingQueue< TRequest >::GetHandle(), CBioTreeContainer::GetLeafCount(), SServerNotifications::GetNextNotification(), CServer_ConnectionPool::GetPollAndTimerVec(), CPSG_TaskGroup::GetTask(), CBlast_def_line::GetTaxIds(), CWGSMasterDescrSetter::Loaded(), CSeqTableGridPanel::MakeColumnReadOnly(), CAlignCompare::NextGroup(), CStringConstraintSelect::OnApply(), CRemoveSequencesDlg::OnButtonMoveLeft(), CVcfRefSequencesPanel::OnChecklistboxToggled(), CAppPackagesDlg::OnEnablePkg(), CUpdateMultiSeq_Dlg::OnIdle(), CBarcodeTool::OnSelect(), CPSG_TaskGroup::PostFinished(), CNCBlobAccessor::PutSucceeded(), CCgiCookies::Remove(), CArgs::Remove(), CServer_ConnectionPool::Remove(), RowSourceTable::removeEntriesForCD(), CWorkerNodeCleanup::RemoveListener(), CWorkerNodeCleanup::RemoveListeners(), CProjectItem::RemoveTag(), CWindowManagerService::RemoveToolBarContext(), NWinHook::CHookedFunction::ReplaceInOneModule(), CObjectManager::RevokeDataLoaders(), CObjectManager::RevokeScope(), s_CleanupOrgModAndSubSourceOther_helper(), CTextPanelContext::SelectItem(), CTextSubpanel::SetClusters(), CFieldSubpanel::SetClusters(), CStructCommentSubpanel::SetClusters(), CRenderingContext::SetIsDrawn(), CObjectManager::SetLoaderOptions(), CNSClientsRegistry::SetPreferredAffinities(), CPhyloTree::SetSelection(), CThreadPool_Impl::SetThreadIdle(), CBlockingQueue< TRequest >::SetUserPriority(), CThreadPool_Impl::ThreadStopped(), SMakeProjectT::VerifyLibDepends(), CCassBioseqInfoTaskFetch::Wait1(), CBlockingQueue< TRequest >::Withdraw(), CBlobCacher::x_CacheMapRecs(), CNSClientsRegistry::x_ClearClient(), CRangeSet< CPairwiseAln::TPos >::x_CombineWith(), CPSGS_Dispatcher::x_ConcludeIDGetNARequestStatus(), CRangeSet< CPairwiseAln::TPos >::x_Divide(), CDataSource::x_DropTSE(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::x_Erase(), CMergeTree::x_FindBefores_Up_Iter(), CMergeTree::x_FindBefores_Up_Recur(), limited_size_map< string, CRef< CSlot > >::x_GC(), CDBLB_ServiceMapper::x_IsEmpty(), CGFFReader::x_MergeAttributes(), CNgAlignApp::x_PrintNoHitList(), CMergeTree::x_RemoveChild(), CSrcTablePrimerColumn::x_RemoveEmptyValues(), CMergeTree::x_RemoveParent(), CDataSource::x_ResetDirtyAnnotIndex(), CObjectManager::x_RevokeDataLoader(), CHitMatrixGraph::x_SelectByPoint(), CHitMatrixGraph::x_SelectByRect(), CPhyloTree::x_SetSelState(), CRangeSet< CPairwiseAln::TPos >::x_Subtract(), CRangeSet< CPairwiseAln::TPos >::x_TrimBefore(), CRangeSet< CPairwiseAln::TPos >::x_TrimStartingWith(), CMergeTree::x_UnLinkNodes(), and CTraversalNode::~CTraversalNode().
◆ find() [1/2]
◆ find() [2/2]
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Definition at line 137 of file set.hpp.
Referenced by CDockContainer::ActivateClients(), CServer_ConnectionPool::Add(), CExportTableDlg::AddCdsGeneMrnaTable(), CScopeTransaction_Impl::AddEditSaver(), CDataTypeModule::AddImportRef(), AddMasterDescr(), CWGSDb_Impl::AddMasterDescr(), CGBProjectHelper::AddProjectItemsFromRID(), CSAM_CIGAR_Formatter::AddRow(), CWindowManagerService::AddToolBarContext(), CFileCode::AddType(), ResidueProfiles::adjustConsensusAndGuide(), CCyclicDepends::AnalyzeProjItemNew(), CSymResolver::Append(), CConvertDescToFeatComment::apply(), CConvertDescToFeatSource::apply(), CConvertDescToFeatPub::apply(), CConvertDescToFeatPubConstraint::apply(), CRemoveStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CPCRSetList::AreSetsUnique(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CSGAlignmentDS::CalculateAlignmentScore(), CGenerateIncludesCallback::Call(), CGenerateStoredArgVariablesCallback::Call(), CGenerateStoredArgInitializerCallback::Call(), variation_ref::CVariationUtil::CheckExonBoundary(), CAgpValidateReader::CIdsNotInAgp::CheckIds(), pub_report::CheckRefs(), CBarcodeTool::CheckRow(), CSimpleDictionary::CheckWord(), CRemoveSequencesDlg::ChooseSequence(), impl::CDriverContext::CloseOldIdleConns(), CMacroEditorContext::CMacroEditorContext(), CPhyloTreeDataSource::CollapseByDistance(), CProjBulderApp::CollectLibToLibDependencies(), CNAnnotFilter::Consume(), CCdsToMatPeptide::ConvertInner(), CRemoveFeaturesDlg::CountOrphanedProteins(), CProjBulderApp::CreateCheckList(), XSDParser::CreateTmpEmbeddedName(), CTaskCmdLineArgs::CTaskCmdLineArgs(), CMSPeak::CullIterate(), CPkgManager::DependsOn(), CSelectionVisitor::DeSelectObject(), CSameConstraintMatcher::DoesTextMatch(), CPaintSequence::DrawTextCell(), CLDS2_ObjectParser::EndBlob(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::erase(), CDFamily::extractFamily(), CAnnotationASN1::ExtractModels(), CTrackUtils::ExtractTrackConfig(), CDataTrackUtils::FeatSubtypes2TrackSubtypes(), CDataType::FileName(), limited_size_map< string, CRef< CSlot > >::find(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), CEditingActionDescLocalId::Find(), CEditingActionDescComment::Find(), SeqSwapper::findBestPairings(), CSeq_loc_CI_Impl::FindInnerEquivSet(), SeqSwapper::findReplacements(), CFlatXrefQVal::Format(), fta_if_wgs_acc(), CGeneFinder::GeneMatchesXref(), DTDParser::GenerateDataTree(), CCodeGenerator::GenerateModuleCPP(), CCodeGenerator::GenerateModuleHPP(), CProjBulderApp::GenerateUnixProjects(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::get(), CSeqAnnotFromFasta::GetBlocksFromCounts(), CConvertCdsToMiscFeat::GetCommand(), CEditHistory::GetCommand(), CFixForTransSplicing::GetCommand(), CFuseFeaturesDlg::GetCommand(), CRmDupFeaturesDlg::GetCommand(), CUnculTaxTool::GetCommandFromValuesTable(), CAsnViewContext::GetCurrentSelection(), CFlatFileViewContext::GetCurrentSelection(), GetDuplicateFeaturesForRemoval(), CValidator::CCacheImpl::GetFeatFromCacheMulti(), variation::GetFocusLocusIDs(), CFeatList::GetItem(), CAnnotMapping_Info::GetMappedSeq_align(), CSeqEntrySource::GetNext(), CTableDataSeq_table::GetRowLabel(), SSatInfoEntry::GetSecureConnection(), CTextPanelContext::GetSelectedObjects(), CViewGraphic::GetSelection(), CPhyloTree::GetSelState(), COSGServiceMapper::GetServerOptions(), GetSortedFeatList(), CNcbiTestApplication::GetTestResultString(), GetTreeNeighborhood(), CPsiBlastIterationState::HasConverged(), CNCBlobAccessor::HasPutSucceeded(), CScopeTransaction_Impl::HasScope(), CProjectItem::HasTag(), HasWGSMasterMark(), CCorrectIntervalOrder::Init(), CRemoveFeaturesDlg::Init(), CRemoveGeneXrefs::Init(), CSuppressGenes::Init(), CNetStorageServer::IsAdminClientName(), CProjBulderApp::IsAllowedProjectTag(), CMsvcSite::IsBanned(), IsCapNameCorrect(), RowSourceTable::isCDInScope(), CTextPanelContext::IsItemSelected(), CNSTServiceRegistry::IsKnown(), CSubSource::IsPlasmidNameValid(), CDataLoader::IsProcessedNA(), CMsvcSite::IsProvided(), CNcbiTestApplication::IsTestToFix(), CmRNACDSLinker::LinkByLabel(), CmRNACDSLinker::LinkByLabelAndLocation(), CmRNACDSLinker::LinkByOverlap(), CmRNACDSLinker::LinkByProduct(), ListOrphanProteins(), CFeatureTypePanel::ListPresentFeaturesFirst(), CCompoundRWRegistry::LoadBaseRegistries(), CDataTool::LoadDefinitions(), CWGSMasterDescrSetter::Loaded(), CFileLoadWizard::LoadFormats(), MakeFileName(), CUniqueLabelGenerator::MakeUniqueLabel(), BlockModel::mask(), CSeq_id_Which_Tree::Match(), CAlignFilter::Match(), CSelectionEvent::MatchLocWithId(), CMAViewManager::NeedAnchorPanel(), CSeqDBLMDB::NegativeTaxIdsToOids(), CMacroFlowEditor::OnAppendClick(), CVcfRefSequencesPanel::OnChecklistboxToggled(), CSuspectProductRulesEditor::OnDeleteRules(), CGrid::OnGridLabelRightClick(), CAppPackagesDlg::OnPackageSelected(), CBarcodePanel::OnPaint(), CPaintSequence::OnPaint(), CFilterColumnsDlg::OnSelectBtnClick(), CStructCommentSubpanel::OnSelectButton(), CSequesterSets::OnSequester(), CAppDialogs::OpenViewlDialog(), CCharInSet::operator()(), PLibExclude::operator()(), PSourcesExclude::operator()(), visitor_string_query::operator()(), CAnnot_CI::operator=(), CRemoveProteins::OrphanedProteins(), CAdjustFeaturesForGaps::PopulateFeatureList(), CPSG_TaskGroup::PostFinished(), CGnomonAnnotator::Predict(), CNSClient::Print(), CTable2AsnStructuredCommentsReader::ProcessComments(), XSDParser::ProcessNamedTypes(), CVariantDescriptors::PushBack(), CNCPeriodicSync::ReConfig(), CSequesterSets::RecursiveCollectSets(), CAllOtherFeaturesTrack::ReinitNASubtracks(), CArgs::Remove(), CRemoveFeaturesDlg::RemoveDuplicateFeatures(), RemoveDuplicateGoTerms(), CRemoveFeaturesDlg::RemoveOrphansRenormalizeNucProtSets(), CWindowManagerService::RemoveToolBarContext(), NWinHook::CHookedFunction::ReplaceInOneModule(), CGeneFinder::ResolveGeneXref(), CAgpFastaComparator::Run(), CWinMaskDemoApplication::Run(), CSampleNetScheduleNode::Run(), s_AnalyzeLibraryOrder(), s_CleanupOrgModAndSubSourceOther_helper(), s_CollectAllLeaves(), s_EliminateDuplicates(), s_FindNextOffset(), s_HasUnprocessedCdregions(), s_IncludeDefline_NegativeTaxid(), s_IncludeDefline_Taxid(), s_IncludeDeflineTaxid(), s_Initialize(), s_IsAsmAccEquiv(), s_MakeGroupsForUniqueValues(), s_MoveNonDuplicatedItems(), s_RemoveDependentItems(), SeqTree::selectByRowID(), CTextPanelContext::SelectItem(), CCompareSeqRegions::SelectMatches(), set_contains(), CClickableSortUniqueCount::SetExpandedNodes(), CMacroFlowEditor::SetExpandedNodes(), CPhyloTree::SetExplicitlySelected(), CFilterColumnsDlg::SetGridAdapter(), CObjectManager::SetLoaderOptions(), CRelaxedLookupDlg::SetPubdesc(), CGridWidget::SetSelection(), CPhyloTree::SetSelection(), CRBSubpanel::SetSubsets(), CNcbiTestApplication::SetTestErrored(), CThreadPool_Impl::SetThreadIdle(), IBISAnnotateDialog::SetupGUIControls(), CBlockingQueue< TRequest >::SetUserPriority(), CMSPeak::SmartCull(), ColumnResidueProfile::sumUpColumnWeightsByRow(), CThreadedApp::TestApp_DelayedStartSyncPoint(), CTestAction::TestOID(), ThrowIfInvalidTask(), CAlignTabExportPage2::TransferDataToWindow(), MarkupCappedEst::transform_align(), MarkupTrustedGenes::transform_align(), TraverseAndRunTestCases(), ResidueProfiles::traverseColumnsOnMaster(), CAgpErrEx::TreatAsError(), TreeConvert2ContainerPartial(), CFeatList::TypeValid(), UpdateDensegAlignment(), CRemoveSequencesDlg::UpdateList(), CRBSubpanel::UpdateList(), CSymbolGuard::UpdateSymbols(), variation::ValidExonTerminal(), CArgAllow_Strings::Verify(), CArgAllowGeneticCodeInteger::Verify(), SMakeProjectT::VerifyLibDepends(), CEvent::Visit(), CNSClientsRegistry::WasGarbageCollected(), CBlockingQueue< TRequest >::Withdraw(), CNCServer::WriteAppSetup(), CNCBlobStorage::WriteDbInfo(), CSourceFeatureItem::x_AddQuals(), CConvertFeatDlg::x_AddUnverified(), CBlobCacher::x_CacheMapRecs(), CBlobCacher::x_CacheNextFile(), CMiscSeqTable::x_CheckDuplicateIds(), CNCActiveSyncControl::x_CheckSlotOurSync(), CCompareSeq_locs::x_Compare(), CPSGS_Dispatcher::x_ConcludeIDGetNARequestStatus(), CObjConvProfile::x_CreateRelatedMap(), CVCFVariantsBase::x_DeserializeDescr_Range(), CNCMessageHandler::x_DoCmd_GetBListNext(), CQueueDataBase::x_Dump(), CArgs::x_Find(), CArgDescriptions::x_Find(), CCorrectGenesDialog::x_FindExactMatches(), x_FindLatestSequence(), CCorrectGenesDialog::x_FindNonExactMatches(), CMultiAligner::x_FindQueryClusters(), CProjectLoadOptionPanel::x_Finish(), CPkgManager::x_GetBasePkgs(), CTL_LangCmd::x_GetDynamicID(), CMacroFeatsOnSeqPanel::x_GetFeatureChoices(), CScriptPanel::x_GetInsertIndex(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CGapStatsApplication::x_IncludeGapType(), variation::CVariationUtil::CVariantPropertiesIndex::x_Index(), CDataType::x_IsSavedName(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), CValidError_imp::x_IsSuppressed(), CFastaIdHandler::x_IsUniqueIdHandle(), CAddFeatureBetweenDlg::x_ListFeatures(), CBulkOtherAddPanel::x_ListFeatures(), CAlignOtherAddPanel::x_ListFeatures(), CNAUtils::x_NAIdMatchesGI(), CPSGS_AnnotProcessor::x_OnNamedAnnotData(), CPSGS_AnnotProcessor::x_OnNamedAnnotError(), CQueueDataBase::x_Open(), CMacroParser::x_ParseFunctionCall(), CGC_Assembly_Parser::x_ParseGCSequence(), CNAUtils::x_ParseNAMetaData(), CArgDescriptions::x_PostCheck(), CNgAlignApp::x_PrintNoHitList(), CFilterColumnsDlg::x_ProcessSelectionPattern(), CNewCleanup_imp::x_ProtGBQualBC(), CCleanupHugeAsnReader::x_RecordFeatureId(), CAllOtherFeaturesTrack::x_ReinitSubtracks(), CFlatGatherer::x_RemoveDupComments(), CQuickLaunchList::x_Save(), CPhyloTree::x_SetSelState(), CFeatureGraph::x_StartJob(), CUpdateMultiSeq_Dlg::x_UpdateAlignmentPanel(), CSeqTableGridPanel::x_UpdateCollapsedRow(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CValidError_bioseq::x_ValidateMultiplePubs(), CFeatTableEdit::xAddTranscriptAndProteinIdsToMrna(), CFeatTableEdit::xAddTranscriptAndProteinIdsToUnmatchedMrna(), CGtfWriter::xAssignFeatureAttributeGeneId(), CGvfWriter::xAssignFeatureAttributes(), CGff3Writer::xAssignFeatureAttributesQualifiers(), CGtfWriter::xAssignFeatureAttributeTranscriptId(), CGtfReader::xFeatureAddQualifiers(), CGtfReader::xFeatureSetQualifiers(), and CSrcWriter::xGetOrderedFieldNames().
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Definition at line 149 of file set.hpp.
Referenced by CTabDelimitedValidator::_CheckHeader(), CDockContainer::ActivateClients(), CArgs::Add(), CDisambiguator::Add(), CInt_fuzz::Add(), CCgiCookies::Add(), CSeq_loc_Conversion_Set::Add(), CServer_ConnectionPool::Add(), CMiscSeqTableColumn::AddApplyObjectValue(), CLDS2_ObjectParser::AddBioseq(), CExportTableDlg::AddBioSource(), CAlignFilter::AddBlacklistQueryId(), CAlignFilter::AddBlacklistSubjectId(), CExportTableDlg::AddCdsGeneMrnaTable(), CWGSMasterDescrSetter::AddChunkToWait(), CLDS2_Manager::AddDataFile(), CLDS2_Manager::AddDataUrl(), CArgDescriptions::AddDependencyGroup(), CScopeTransaction_Impl::AddEditSaver(), RowSourceTable::addEntry(), CMergeTree::AddEquiv(), CAlignFilter::AddExcludeNotInQueryId(), CAlignFilter::AddExcludeNotInSubjectId(), CUniqueLabelGenerator::AddExistingLabel(), CMacroStat::AddFunctionName(), CDataTypeModule::AddImportRef(), CWorkerNodeCleanup::AddListener(), CIdMapperComposite::AddMapper(), CSourceModParser::AddMods(), CBlob_Annot_Info::AddNamedAnnotName(), CPackString::AddNew(), CMakeNode::AddProject(), CSAM_CIGAR_Formatter::AddRow(), AddSeqIdToCurrentContext(), CNCDistributionConf::AddServerSlots(), CMakeNode::AddSubdir(), CGeneModel::AddSupport(), CProjectItem::AddTag(), CPSG_TaskGroup::AddTask(), CSeqDBGiList::AddTaxIds(), CSeqDBNegativeList::AddTaxIds(), CTemplate1TypeStrings::AddTemplateInclude(), SNetServiceMap::AddToAllowed(), CWindowManagerService::AddToolBarContext(), CFileCode::AddType(), CAlignFilter::AddWhitelistQueryId(), CAlignFilter::AddWhitelistSubjectId(), CSimpleDictionary::AddWord(), CArgAllow_Strings::Allow(), CArgAllow_Doubles::Allow(), CArgAllow_Symbols::Allow(), CArgAllow_Int8s::Allow(), CArgAllow_Doubles::AllowRange(), CArgAllow_Int8s::AllowRange(), AnalyzeDllData(), CCyclicDepends::AnalyzeProjItem(), CCyclicDepends::AnalyzeProjItemNew(), CSymResolver::Append(), CFeatModApply::Apply(), CConvertDescToFeatComment::apply(), CConvertDescToFeatSource::apply(), CConvertDescToFeatPub::apply(), CConvertDescToFeatPubConstraint::apply(), CLabelRna::apply(), ApplyInheritedSeqIds(), CRemoveFeaturesDlg::ApplyToCSeq_entry(), CRemoveStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CChangeStructuredCommentKeyword::ApplyToCSeq_entry_user(), CPCRSetList::AreSetsUnique(), BlastKmerGetKmerSet(), BlastKmerGetKmerSet2(), BlastKmerGetKmerSetStats(), BOOST_AUTO_TEST_CASE(), CAlnMixSegments::Build(), WSDLParser::BuildDataTree(), CFastaIdHandler::CacheIdHandle(), CGraphUtils::CalcGraphLevels(), CChain::CalculateSupportAndWeightFromMembers(), CAlignStrandSorter::CAlignStrandSorter(), CGenerateIncludesCallback::Call(), CGenerateStoredArgVariablesCallback::Call(), CGenerateStoredArgInitializerCallback::Call(), CTreeIteratorTmpl< CTreeLevelIterator >::CanSelect(), CBlastDbBioseqSource::CBlastDbBioseqSource(), CBlastQueryFilteredFrames::CBlastQueryFilteredFrames(), CBlastxAppArgs::CBlastxAppArgs(), CChangeStructuredCommentKeyword::CChangeStructuredCommentKeyword(), CCloneConcordancySorter::CCloneConcordancySorter(), CDbvarClinicalAsstSorter::CDbvarClinicalAsstSorter(), CDbvarPilotSorter::CDbvarPilotSorter(), CDbvarQualitySorter::CDbvarQualitySorter(), CDbvarSamplesetTypeSorter::CDbvarSamplesetTypeSorter(), CDbvarValidationSorter::CDbvarValidationSorter(), CFeatureGraph::CFeatureGraph(), CFlatSeqLoc::CFlatSeqLoc(), CGapStatsApplication::CGapStatsApplication(), CGoTermSortStruct::CGoTermSortStruct(), CGRCStatusSorter::CGRCStatusSorter(), variation_ref::CVariationUtil::CheckExonBoundary(), variation::CVariationUtil::CheckExonBoundary(), CheckExpectedQuals(), CAgpValidateReader::CIdsNotInAgp::CheckIds(), CBarcodeTool::CheckRow(), CRemoveSequencesDlg::ChooseSequence(), CLiteAlign::CLiteAlign(), impl::CDriverContext::CloseOldIdleConns(), CLocalFileRestorer::CloseOpenViews(), CMacroEditorContext::CMacroEditorContext(), CMsvcPrjProjectContext::CMsvcPrjProjectContext(), CMsvcSite::CMsvcSite(), CPhyloTreeDataSource::CollapseByDistance(), CollectDescriptors(), CProjBulderApp::CollectLibToLibDependencies(), CMsvcSite::CollectRequires(), CExplicit_Mapper_Sequence_Info::CollectSynonyms(), CDefault_Mapper_Sequence_Info::CollectSynonyms(), CTestMapperSeqInfo::CollectSynonyms(), CScope_Mapper_Sequence_Info::CollectSynonyms(), CSeq_loc_Mapper_Base::CollectSynonyms(), IProjectViewFactory::CombineInputObjects(), CRemoveSequencesDlg::CombineLabelsAll(), CRBSubpanel::CombineLabelsAll(), IProjectViewFactory::CombineObjects(), CTableViewWithTextViewNav::CombineObjects(), CNetBLAST_DMSearchForm::ConstructQuery(), CNAnnotFilter::Consume(), Convert_BioTreeContainer_Seq_id(), Convert_Entrezgene_Seq_loc_Product(), Convert_GC_Assembly_Seq_loc_TopLevel(), Convert_Seq_align_Seq_id(), Convert_Seq_annot_Seq_id(), Convert_Seq_annot_Seq_loc_All(), RowSourceTable::convertFromCDRows(), CPepXML::ConvertFromOMSSA(), CCdsToMatPeptide::ConvertInner(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CPepXML::ConvertModifications(), CPepXML::ConvertModSetting(), CPepXML::ConvertMSHitSet(), CRemoveFeaturesDlg::CountOrphanedProteins(), CRemoveFeaturesDlg::CountProteinsBeforeRemoval(), CProjectTreeFolders::CProjectTreeFolders(), CQueryDataPerChunk::CQueryDataPerChunk(), CRangeSet< CPairwiseAln::TPos >::CRangeSet(), python::CSelectConnPool::Create(), SMakeProjectT::Create3PartyLibs(), CBiosampleChkApp::CreateBiosampleUpdateWebService(), CCompareWithBiosample::CreateBiosampleUpdateWebService(), CClearKeywords::CreateControls(), CEditHistory::CreateControls(), python::CTransaction::CreateCursor(), CreateDllsList(), CGC_Assembly::CreateIndex(), CPSGS_OSGAnnot::CreateRequests(), XSDParser::CreateTmpEmbeddedName(), CGeneModelFactory::CreateTracks(), python::CConnection::CreateTransaction(), CRegEx::CRegXChar::CRegXChar(), CRemoveSeqId::CRemoveSeqId(), CSearchFormBase::CSearchFormBase(), CSeqEntrySource::CSeqEntrySource(), CTblastnAppArgs::CTblastnAppArgs(), CTraversalNode::CTraversalNode(), CMSPeak::CullIterate(), python::CSelectConnPool::Destroy(), CSeqAnnotFromFasta::DetermineMasterIndex(), CResetIds_EditCommand::Do(), COpenViewManager::DoAsyncConversion(), DoesPatternMatchHighlightedResidues(), AlignmentUtility::DoLeaveNOut(), SMakeProjectT::DoResolveDefs(), CSampleTest::DoTest(), CMAViewManager::DoTransition(), CRegExFSA::CRegExState::Emit(), CCdCore::EraseSequences(), CCmdChangeProjectItem::Execute(), ExpandSupport(), CAnnotationASN1::ExtractModels(), ExtractSupportModels(), CTrackUtils::ExtractTrackConfig(), CDataTrackUtils::FeatSubtypes2TrackSubtypes(), CDataType::FileName(), CAlignCollapser::FilterAlignments(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), CEditingActionDescLocalId::Find(), CEditingActionDescComment::Find(), SeqSwapper::findBestPairings(), CDFamily::findChildren(), CCompactSAMApplication::FindCompactAligns(), FindCompartments(), CChainer::CChainerImpl::FindContainedAlignments(), CCyclicDepends::FindCyclesNew(), CSeq_id_Which_Tree::FindMatch(), CSeq_id_Textseq_Tree::FindMatch(), CSeq_id_Local_Tree::FindMatch(), CSeq_id_General_Tree::FindMatch(), CSeq_id_PDB_Tree::FindMatch(), CFindEditSequence::FindMatchPositions(), CSeq_id_int_Tree::FindMatchStr(), CSeq_id_Gi_Tree::FindMatchStr(), CSeq_id_Local_Tree::FindMatchStr(), CSeq_id_General_Tree::FindMatchStr(), CSeq_id_Giim_Tree::FindMatchStr(), CSeq_id_Patent_Tree::FindMatchStr(), CSeq_id_PDB_Tree::FindMatchStr(), FindMultiplyIncluded(), CObjectConverter::FindRelations(), SeqSwapper::findReplacements(), CSeq_id_Which_Tree::FindReverseMatch(), CSeq_id_Textseq_Tree::FindReverseMatch(), CSeq_id_PDB_Tree::FindReverseMatch(), FindStarts(), CInternalStopFinder::FindStartsStops(), CInternalStopFinder::FindStartStopRanges(), SeqSwapper::findStructuralPendings(), CSeqDBAliasNode::FindVolumePaths(), CFlatXrefQVal::Format(), g_FindSegs(), g_GetWorkerNodes(), CWsdlTypeStrings::GenerateClassCode(), CCodeGenerator::GenerateCvsignore(), DTDParser::GenerateDataTree(), CCodeGenerator::GenerateModuleCPP(), CCodeGenerator::GenerateModuleHPP(), CProjBulderApp::GenerateUnixProjects(), variation::CVariationUtil::CCdregionIndex::Get(), CFlatFileConfig::GetAllGenbankStrings(), CBLASTParams::GetAllRepeatLibs(), CSeqDBImpl::GetAllTaxIDs(), CPSGDataLoader_Impl::GetAnnotRecordsNAOnce(), CSeqUtils::GetAssmAccs_Gi(), CAutoDef::GetAvailableModifiers(), CTSE_LockSet::GetBestTSEs(), CScope_Impl::GetBioseqHandle(), CWGSClient::GetBioseqInfo(), CCDDDataLoader_Impl::GetBlobBySeq_ids(), CPSGDataLoader_Impl::GetBlobsOnce(), CAlignCollapser::GetCollapsedAlgnments(), CDataTrackUtils::GetColumnHeader(), CConvertCdsToMiscFeat::GetCommand(), CEditHistory::GetCommand(), CFixForTransSplicing::GetCommand(), CFuseFeaturesDlg::GetCommand(), CRmDupFeaturesDlg::GetCommand(), CReorderSequencesDlg::GetCommand(), CVariationUtilities::GetCommonRepeatUnit(), CAsnViewContext::GetCurrentSelection(), CFlatFileViewContext::GetCurrentSelection(), CSeqDBLMDBSet::GetDBTaxIds(), CDFamily::getDescendants(), CDataLoaderPatcher::GetDetailedRecords(), GetDuplicateFeaturesForRemoval(), CClickableSortUniqueCount::GetExpandedNodes(), CMacroFlowEditor::GetExpandedNodes(), CVDBAliasNode::GetExpandedPaths(), CLDS2_DataLoader::GetExternalRecords(), CDataTrackUtils::GetFeatSubtypes(), CAggregateFeatureTrack::GetFeatSubtypes(), CFeatureTrack::GetFeatSubtypes(), CGeneModelTrack::GetFeatSubtypes(), CLDS2_Database::GetFileNames(), variation::GetFocusLocusIDs(), GetGoTermErrors(), GetIdLabel(), CProjectItemsTree::GetInternalDepends(), CStructCommentSubpanel::GetLabelsFromSeq(), CBioTreeContainer::GetLeafCount(), CBlast_def_line::GetLeafTaxIds(), CSeqDBImpl::GetLeafTaxIDs(), CCassConnection::GetLocalPeersAddressList(), ILayoutTrackFactory::GetMatchedAnnots(), CSeq_id::GetMatchingIds(), CSeq_id::GetMatchingTextseqIds(), CSourceModParser::GetModAllowedValues(), CSourceModParser::GetMods(), CNAUtils::GetNATrackInfo(), CImportStrategy::GetNegativeTaxidList(), CClusterDBSource::GetNext(), CVDBAliasNode::GetNodePaths(), CCrossPanelIR::GetObjectSelection(), CHitMatrixPane::GetObjectSelection(), CProjectService::GetObjProjects(), CMSResponse::GetOidsBelowThreshold(), CCDDDataLoader::GetOrphanAnnotRecordsNA(), CDataLoader::GetOrphanAnnotRecordsNA(), CSNPDataLoader_Impl::GetOrphanAnnotRecordsOnce(), CVDBGraphDataLoader_Impl::GetOrphanAnnotRecordsOnce(), CPropagateDescriptors::GetPropagateUpCommand(), GetProteinWeights(), CConvertFeatDlg::GetQualList(), CAsnCache_DataLoader::GetRecords(), CBlastDbDataLoader::GetRecords(), CDataLoaderPatcher::GetRecords(), CBAMDataLoader::GetRecords(), CSRADataLoader::GetRecords(), CSplitDataLoader::GetRecords(), CBuffer_DataLoader::GetRecords(), CHugeAsnDataLoader::GetRecords(), CPSGDataLoader_Impl::GetRecordsOnce(), CCSRADataLoader_Impl::GetRecordsOnce(), CWGSDataLoader_Impl::GetRecordsOnce(), CClassTypeInfoBase::GetRegisteredModuleNames(), CGC_Assembly::GetRepliconTypeLocRole(), CScoreLookup::GetScore(), CRemoteBlast::GetSearchOptions(), CValidatePanel::GetSelected(), CValidatorReportCfgDlg::GetSelected(), CVcfColumnSelectionPanel::GetSelectedInfoFields(), CTextPanelContext::GetSelectedObjects(), CGridWidget::GetSelectedRows(), CStringConstraintSelect::GetSelectedRows(), CViewGraphic::GetSelection(), GetSeqTableFromSeqEntry(), COSGServiceMapper::GetServerOptions(), GetSortedFeatList(), CStructCommentFieldPanel::GetStructCommentFields(), NSearchFeatPanel::GetSubtypesForType(), CUnculturedTool::GetSuggestedCorrection(), CMacroEngine::GetSynonymFilenames(), CLDS2_Database::GetSynonyms(), CBlastOptionsFactory::GetTasks(), CImportStrategy::GetTaxidList(), CBlast_def_line::GetTaxIds(), CSeqDBLMDB::GetTaxIdsForOids(), CSeqDBLMDBSet::GetTaxIdsForOids(), GetTaxIdWithWindowMaskerSupport(), CTaxTreeDS_ObjMgr::GetTaxMap(), GetTreeNeighborhood(), CDataSource::GetTSESetWithBioseqAnnots(), CCodeGenerator::GetTypes(), variation::GetUniquePrimaryTranscriptId(), CTrackConfigManager::GetUsedFeatureKeys(), GetVDBScope(), CObjectIStream::GuessDataType(), CObjectIStreamAsnBinary::GuessDataType(), CFeatureGenerator::SImplementation::HasMixedGenomicIds(), CScoreLookup::HelpText(), CCodeGenerator::IncludeAllMainTypes(), CCorrectIntervalOrder::Init(), CRemoveFeaturesDlg::Init(), CRemoveGeneXrefs::Init(), CSuppressGenes::Init(), CTableDataGCAssembly::Init(), CTableDataSeq_table::Init(), CSeqScores::Init(), CSGAlignmentDS::InitAlignQualityScore(), CSGAlignmentDS::InitAlignScoreCache(), CMsvcSite::InitializeLibChoices(), CWinMaskUtil::CIdSet_SeqId::insert(), limited_size_map< string, CRef< CSlot > >::insert(), IntersectByMaster(), CAttribTableColumnIdPanel::IsInputValid(), CThreadPool_Impl::LaunchThreads(), CMatchFeatureTableDlg::LinearAutomatch(), CmRNACDSLinker::LinkByLabel(), CmRNACDSLinker::LinkByLabelAndLocation(), CmRNACDSLinker::LinkByOverlap(), CmRNACDSLinker::LinkByProduct(), CSeqDBVol::ListColumns(), CBlastQueryFilteredFrames::ListFrames(), ListOrphanProteins(), CFeatureTypePanel::ListPresentFeaturesFirst(), CCompoundRWRegistry::LoadBaseRegistries(), CId2ReaderBase::LoadBlobSet(), CDataTool::LoadDefinitions(), CProjBulderApp::LoadDepGraph(), CFileLoadWizard::LoadFormats(), CProjBulderApp::LoadProjectTags(), CBamRefSeqInfo::LoadSeqChunk(), value_slice::CMakeObject< CP, set< T >, CDB_Result >::Make(), CSeqTableGridPanel::MakeColumnReadOnly(), CFeatureTableReader::MakeGap(), CSeq_loc_CI_Impl::MakeLoc(), CIdMapper::MapObject(), BlockModel::mask(), CSelectionEvent::MatchLocWithId(), CMAViewManager::NeedAnchorPanel(), CSeqDBLMDBSet::NegativeTaxIdsToOids(), CAlignCompare::NextGroup(), CCompareWithBiosample::OnAddToSample(), CCompareWithBiosample::OnAddToSource(), CMacroFlowEditor::OnAppendClick(), CStringConstraintSelect::OnApply(), CRemoveSequencesDlg::OnButtonMoveRight(), CAlignmentTrack::OnChangeProjectedFeats(), CVcfRefSequencesPanel::OnChecklistboxToggled(), CSuspectProductRulesEditor::OnDeleteRules(), CAppPackagesDlg::OnEnablePkg(), CPSGS_SNPProcessor::OnGotAnnotation(), CGrid::OnGridLabelRightClick(), CAgpValidateReader::OnObjectChange(), CAgpRenumber::OnObjectChange(), CProjectTreePanel::OnRemove(), CMacroWordSubstitutionDlg::OnRemove(), CWordSubstitutionDlg::OnRemove(), CCompoundConstraintPanel::OnRemoveConstraint(), CSuspectCompoundConstraintPanel::OnRemoveConstraint(), CMacroCompoundConstraintPanel::OnRemoveConstraint(), CBarcodeTool::OnRemoveKeyword(), CBarcodeTool::OnSelect(), CRemoveSequencesDlg::OnSelect(), CBarcodeTool::OnSelectAll(), CRemoveSequencesDlg::OnSelectAll(), CVcfRefSequencesPanel::OnSelectAllBtnClick(), CFilterColumnsDlg::OnSelectBtnClick(), CSequesterSets::OnSequester(), CSuspectProductRulesEditor::OnShowDiffs(), CBDB_Cache::Open(), CPubseqGatewayApp::OpenCache(), CAppDialogs::OpenViewlDialog(), FClientFinder::operator()(), SNodeNameUpdater::operator()(), BlockModel::operator-(), limited_size_map< string, CRef< CSlot > >::operator[](), CRemoveProteins::OrphanedProteins(), CPackString::Pack(), CFastaReader::ParseGapLine(), PT::CProjectFolder::Paste(), CAdjustFeaturesForGaps::PopulateFeatureList(), CLocationListCtrl::PopulateIdListFromScope(), CPSG_TaskGroup::PostFinished(), CGnomonAnnotator::Predict(), CUnculTaxTool::PreloadCache(), CObjectsSniffer::ProbeAny(), CSplitCacheApp::ProcessBlob(), CTable2AsnStructuredCommentsReader::ProcessComments(), CPsgPerfApplication::ProcessLine(), XSDParser::ProcessNamedTypes(), CDUpdater::processPendingToNormal(), CPSGS_OSGResolveBase::ProcessResolveReply(), CSplitCacheApp::ProcessSeqId(), SeqSwapper::promotePendingRows(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::put(), CBlockingQueue< TRequest >::Put(), CNCBlobAccessor::PutFailed(), CSimpleDictionary::Read(), CGFFReader::Read(), readGFF3(), CColumnarVCFReader::ReadHeader(), CNCPeriodicSync::ReConfig(), CSequesterSets::RecursiveCollectSets(), CUsedTlsBases::Register(), CClassTypeInfoBase::Register(), CClassTypeInfoBase::RegisterModule(), CObjectStack::RegisterPathHook(), CObjectManager::RegisterScope(), SServerNotifications::RegisterServer(), CProjBulderApp::RegisterSuspiciousProject(), CRemoveFeaturesDlg::RemoveDuplicateFeatures(), RemoveDuplicateGoTerms(), RowSourceTable::removeEntriesForCD(), CRemoveFeaturesDlg::RemoveOrphansRenormalizeNucProtSets(), CReorderSequencesDlg::ReorderById(), NWinHook::CHookedFunction::ReplaceInOneModule(), SPSGS_AnnotRequest::ReportBlobError(), SPSGS_AnnotRequest::ReportResultStatus(), CProjectTreeBuilder::ResolveDefs(), CGeneFinder::ResolveGeneXref(), CCompactSAMApplication::Run(), CExonSelectorApplication::Run(), SGridWorkerNodeImpl::Run(), CMultiApplication::Run(), CPrimeCacheApplication::Run(), CDemoApp::Run(), CSampleNetScheduleNode::Run(), CFeatTreeSampleApp::Run(), RunNIterationsWithoutConverging(), CGapStatsApplication::RunNoCatch(), s_AddUserObjectType(), s_AlignIdsFromEquivList(), s_AnalyzeLibraryOrder(), s_CheckUniqueValues(), s_CollectAllLeaves(), s_CollectBestOverlaps(), s_CollectRelPathes(), s_CollectSeqIds(), s_ConvertMetaData(), s_EliminateDuplicates(), variation::CVariationUtil::s_FindLocationProperties(), s_GatherExistingDOIs(), s_GatherExistingPMIDs(), s_GetAlignmentContent(), s_GetAssmEquiv(), s_GetMandatoryFields(), s_GetTaxIDList(), s_IncludeDefline_Taxid(), s_IncludeDeflineTaxid(), NAdapterSearch::CSimpleUngappedAligner::s_IndexWord(), s_ItemsToViews(), s_LimitDeflines(), s_MakeGroupsForUniqueValues(), s_Match_id(), s_MoveNonDuplicatedItems(), s_OldGetTaxIdWithWindowMaskerSupport(), s_ParseOptionalSettings(), s_ParseSubNodes(), s_ProcessEvidenceString(), s_ProcessTaxIdFilters(), s_ReadIdsFromFile(), s_ReadServerParams(), s_RemoveAliasComponents(), s_RemoveDependentItems(), s_Render_SeqAlign(), s_Seq_align_Seq_loc(), s_SeqDbSetRanges(), s_SetDeflineLeafs(), impl::s_TransformLoginData(), s_UpdateGlobalInfo(), CReaderRequestResult::SaveLocksTo(), ResidueProfiles::segsToSet(), SeqTree::selectByGI(), CHitMatrixGraph::SelectGlyph(), CTextPanelContext::SelectItem(), CCompareSeqRegions::SelectMatches(), CSelectionVisitor::SelectObject(), CSelectionVisitor::SelectSelection(), CPSGS_OSGAnnot::SendReplies(), SeqDB_ReadMemoryTaxIdList(), CDiscontiguousMegablastArgs::SetArgumentDescriptions(), CTSE_Info::SetBioseqUpdater(), CSameConstraintMatcher::SetDesc(), CPhyloTree::SetExplicitlySelected(), CSameConstraintMatcher::SetFeat(), CAggregateFeatureTrack::SetFeatSubtypes(), CFastaReader::SetGapLinkageEvidences(), CFilterColumnsDlg::SetGridAdapter(), CFindEditSequence::SetHighlights(), CGlyphContainer::SetHighlights(), ColumnarVcfCache::SetInfoFields(), CRenderingContext::SetIsDrawn(), CPhyloTree::SetLeavesExplicitlySelected(), CObjectManager::SetLoaderOptions(), CBlobSplitterImpl::SetLoc(), CUIToolRegistry::SetMRUToolNames(), CConversionResultPanel::SetObjects(), CAdvancedAlignCleanup::SetParams(), CDataLoader::SetProcessedNA(), CRelaxedLookupDlg::SetPubdesc(), CSeqDBRangeList::SetRanges(), CVcfRefSequencesPanel::SetReferenceSeqIds(), CSearch< LEGACY, NHITS >::SetResult(), CDesktopCanvas::SetSelectedObjects(), CTextPanelContext::SetSelectedObjects(), CPhyloTree::SetSelection(), CInputStreamSource::SetStandardInputArgs(), CValidErrorSuppress::SetSuppressedCodes(), CNcbiTestApplication::SetTestDisabled(), CNcbiTestApplication::SetTestTimedOut(), CThreadPool_Impl::SetThreadIdle(), IBISAnnotateDialog::SetupGUIControls(), CBlockingQueue< TRequest >::SetUserPriority(), CRegExFSA::CRegExState::Short(), CMSPeak::SmartCull(), CPrimeNumberClient::StartJobs(), ColumnResidueProfile::sumUpColumnWeightsByRow(), SeqSwapper::swapSequences(), CSeqDBLMDBSet::TaxIdsToOids(), CThreadedApp::TestApp_DelayedStartSyncPoint(), CThreadedApp::TestApp_GlobalSyncPoint(), CTestAction::TestOID(), NSearchFeatPanel::CTrackFeatSubtype::Track(), CUnculTaxTool::TryRankFix(), CPCRPrimersPanel::UpdateBioSourcePrimers(), UpdateDensegAlignment(), CRBSubpanel::UpdateList(), CSampleEditSaver::UpdateSeq(), CSymbolGuard::UpdateSymbols(), CSampleEditSaver::UpdateTSE(), CAgpErrEx::UpgradeToError(), CProjectItemsTree::VerifyExternalDepends(), SMakeProjectT::VerifyLibDepends(), CEvent::Visit(), CNCServer::WriteAppSetup(), CAsnSubCacheCreateApplication::WriteBlobsInSubCache(), CNCBlobStorage::WriteDbInfo(), CWriteDB_Volume::WriteSequence(), CPhrap_Contig::x_AddAlignRanges(), CGFFReader::x_AddAttribute(), CGC_Assembly_Parser::x_AddBioseq(), CMergeTree::x_AddChild(), CArgDescriptions::x_AddDesc(), CBioseq_Base_Info::x_AddExistingUserObjectTypes(), CMergeTree::x_AddParent(), CFeatureTableReader::x_AddProteinFeatureToProtein(), CSourceFeatureItem::x_AddQuals(), CDataType::x_AddSavedName(), CScopeTransaction_Impl::x_AddScope(), CWriteDB_IsamIndex::x_AddStringData(), CNcbiTestTreeElement::x_AddToMustLeft(), CNcbiTestTreeElement::x_AddToMustRight(), CReaderRequestResult::x_AddTSE_LoadLock(), CConvertFeatDlg::x_AddUnverified(), CClipboard::x_AddValueEx(), CEditObjectSeq_feat::x_AdjustCircularGene(), CEditObjectSeq_feat::x_AdjustGene(), CGeneModelTrack::x_AdjustSelector(), CCleanupAlignmentsToolManager::x_AreSelfAlignmentsOnly(), CPSGDataLoader_Impl::x_CheckAnnotCache(), CMiscSeqTable::x_CheckDuplicateIds(), CNCActiveSyncControl::x_CheckSlotOurSync(), CAlignCleanup::x_Cleanup_AlignVec(), CAlignCleanup::x_Cleanup_AnchoredAln(), CGBDocument::x_CloseProjectItemViews(), CDataSource::x_CollectBlob_ids(), CEditSeqId::x_CollectChangedIds(), CRangeSet< CPairwiseAln::TPos >::x_CombineWith(), CRangeSet< CPairwiseAln::TPos >::x_CombineWithAndKeepAbutting(), CCompareSeq_locs::x_Compare(), CFeatureGraph::x_Create(), CImportFeatTable::x_CreateCommand(), CFeatureTableReader_Imp::x_CreateGenesFromCDSs(), CHitMatrixDataSource::x_CreateIds(), CBlobCacher::x_CreateInitialFile(), x_CreateLocalCDDEntryChunk(), CMergeAlignmentsJob::x_CreateProjectItems(), CTreeBuilderJob::x_CreateProjectItems(), CRangeSet< CPairwiseAln::TPos >::x_Divide(), CSelectionVisitor::x_DoSelection(), CQueueDataBase::x_Dump(), CAsnSubCacheCreateApplication::x_EliminateIdsAlreadyInCache(), CCompoundRegistry::x_Enumerate(), CArgDependencyGroup::x_Evaluate(), CWriteDB_Impl::x_ExtractDeflines(), CPrimeCacheApplication::x_ExtractDelta(), CPubseqGatewayCacheBioseqInfo::x_ExtractRecord(), CAsnSubCacheCreateApplication::x_FetchMissingBlobs(), CVcfRefSequencesPanel::x_FillList(), CMergeTree::x_FindAfters(), CMergeTree::x_FindAfters_Up(), CMergeTree::x_FindBefores(), CMergeTree::x_FindBefores_Up_Iter(), CMergeTree::x_FindBefores_Up_Recur(), CCorrectGenesDialog::x_FindExactMatches(), IEditingActionFeat::x_FindGeneForFeature(), x_FindLatestSequence(), CMergeTree::x_FindLeafs(), CSeq_id_Textseq_Tree::x_FindMatchByAcc(), CSeq_id_Textseq_Tree::x_FindMatchByName(), CCorrectGenesDialog::x_FindNonExactMatches(), CMultiAligner::x_FindQueryClusters(), CSeq_id_Textseq_Tree::x_FindRevMatchByAccNonPacked(), CSeq_id_Textseq_Tree::x_FindRevMatchByAccPacked(), CTracebackSearchTestFixture::x_FindUsedGis(), CSeqDBAliasNode::x_FindVolumePaths(), CProjectLoadOptionPanel::x_Finish(), CSeq_loc_Mapper_Base::x_ForceSeqTypes(), CAnnot_Collector::x_FoundAllNamedAnnotAccessions(), CUpdateMultiSeq_Dlg::x_GenerateAlignments(), CSGAlignmentJob::x_GetAlignments(), CVecscreen::x_GetAllDropIdsForKeepId(), CNAUtils::x_GetAllGIs(), CBamUILoadManager::x_GetBamRefSeqs(), CPkgManager::x_GetBasePkgs(), CLDS2_ObjectParser::x_GetBlobType(), CQueueDataBase::x_GetConfigQueues(), CAlgoToolManagerBase::x_GetDataLocker(), CTL_LangCmd::x_GetDynamicID(), CMacroFeatsOnSeqPanel::x_GetFeatureChoices(), CScriptPanel::x_GetInsertIndex(), CObjectIndex::x_GetMatches(), CSequenceSearchJob::x_GetMatches(), CAlnMultiWidget::x_GetMatchingHiddenRows(), CNSTServiceRegistry::x_GetMetadataServices(), CAlnTableDS::x_GetNumSeqs(), CGBDataLoader_Native::x_GetRecords(), CGridWidget::x_GetSelectedRows(), CFeatureCheckPanel::x_GetSelections(), CClonePlacementGlyph::x_GetSupportTypeForNonPrototypeEnds(), CSeqDBImpl::x_GetTaxIdsForSeqId(), CScope_Impl::x_GetTSESetWithBioseqAnnots(), CDbTest::x_GetVolumeList(), CDirTest::x_GetVolumeList(), CSourceModParser::x_HandleBadModValue(), CMultiReader::x_HasExactMatch(), CMultiReader::x_HasMatch(), CDataSource::x_IndexAnnotTSEs(), CCassBioseqInfoTaskFetch::x_InheritanceRequired(), CRNANameCompleter::x_Init(), CTaxonTextCompleter::x_Init(), CSeq_align_Mapper_Base::x_Init(), CFeatList::x_Init(), CwxAnnotConfigDlg::x_InitAnnotList(), CBlastDBCmdApp::x_InitBlastDB_TaxIdList(), CSeq_loc_Mapper::x_InitGCSequence(), CAnnot_CI::x_Initialize(), CRangeSet< CPairwiseAln::TPos >::x_IntersectWith(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CAlignFilter::x_IsUnique(), CUpdateMultiSeq_Dlg::x_LaunchJobs(), CMergeTree::x_LinkNodes(), CAddFeatureBetweenDlg::x_ListFeatures(), CBulkOtherAddPanel::x_ListFeatures(), CAlignOtherAddPanel::x_ListFeatures(), CLDS2_DataLoader::x_LoadBlobs(), CCompareWithBiosample::x_LoadData(), CAppPackagesDlg::x_LoadPkgList(), CFeaturePanel::x_LoadSettings(), CFeatureSearchForm::x_LoadSettings(), CFeatureGenerator::SImplementation::x_MapFeature(), CGFFReader::x_MergeAttributes(), CCassBioseqInfoTaskFetch::x_MergeSeqIds(), CSGSegmentMapJob::x_MergeSeqSegments(), CPSGS_AnnotProcessor::x_OnNamedAnnotData(), CPhyTreeView::x_OnSetSelection(), CMacroParser::x_ParseDo(), CLDS2_Manager::x_ParseFile(), CGC_Assembly_Parser::x_ParseGCSequence(), CNAUtils::x_ParseNAMetaData(), CDataLoaderPatcher::x_PatchLockSet(), CArgDescriptions::x_PostCheck(), CBlobCacher::x_PreCacheRecNums(), CBlastDBCmdApp::x_PrintBlastDatabaseTaxInformation(), CNgAlignApp::x_PrintNoHitList(), CMakeBlastDBApp::x_ProcessInputData(), CFilterColumnsDlg::x_ProcessSelectionPattern(), CCleanupHugeAsnReader::x_PruneIfFeatsIncomplete(), CNSClientsRegistry::x_PurgeWNodesAndReaders(), CPrimeCacheApplication::x_Read_Ids(), CPSGDataLoader_Impl::x_ReadCDDChunk(), CNcbiTestApplication::x_ReadConfiguration(), CQueueDataBase::x_ReadDumpQueueDesrc(), CCleanupHugeAsnReader::x_RecordFeatureId(), CObjectManager::x_RegisterLoader(), CFlatGatherer::x_RemoveDupComments(), CSelectionPanel::x_ResetSelObjects(), CObjectManager::x_RevokeDataLoader(), CHitMatrixGraph::x_SelectByPoint(), CHitMatrixGraph::x_SelectByRect(), CBLASTToolManager::x_SelectCompatibleInputObjects(), CAlignGroup::x_SeparateByTaxId(), CCleanupHugeAsnReader::x_SetBioseqHooks(), CCleanupHugeAsnReader::x_SetBioseqSetHooks(), CFeatureGenerator::SImplementation::x_SetComment(), CDataSource::x_SetDirtyAnnotIndex(), CPhyloTree::x_SetSelState(), CCleanupHugeAsnReader::x_SetSeqFeatHooks(), CBlastTabularInfo::x_SetTaxInfoAll(), CMiscSeqTable::x_SetTopSeqEntryForActions(), CMappingObjectLoader::x_ShowMappingDlg(), CSplitDataLoader::x_SplitAligns(), CTSE_Chunk_Info::x_SplitAttach(), CSplitDataLoader::x_SplitFeats(), CSplitDataLoader::x_SplitGraphs(), CFeatureGraph::x_StartJob(), CPrimeCacheApplication::x_StripSeqEntry(), CRangeSet< CPairwiseAln::TPos >::x_Subtract(), CAlnMultiDSBuilder::x_TestAlignments(), CRangeSet< CPairwiseAln::TPos >::x_TrimBefore(), CRangeSet< CPairwiseAln::TPos >::x_TrimStartingWith(), CValidatePanel::x_UpdateList(), CScope_Impl::x_UpdateProcessedNAs(), CRawSeqToDeltaSeqByLoc::x_UpdateRows(), CAssignColumnValueDlg::x_UpdateValues(), CwxGridTableAdapter::x_ValidateColumns(), CValidError_bioseq::x_ValidateMultiplePubs(), CNCActiveSyncControl::x_WaitForExecutingTasks(), CFastaOstream::x_WriteSeqIds(), CFeatTableEdit::xAddTranscriptAndProteinIdsToMrna(), CFeatTableEdit::xAddTranscriptAndProteinIdsToUnmatchedMrna(), CGtfReader::xFeatureAddQualifiers(), and CSrcWriter::xGetOrderedFieldNames().
◆ insert() [2/2]
◆ lower_bound() [1/2]
◆ lower_bound() [2/2]
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Definition at line 138 of file set.hpp.
Referenced by CPackString::AddNew(), CChainer::CChainerImpl::CalculateSpliceWeights(), CRangeSet< CPairwiseAln::TPos >::find(), CRangeSet< CPairwiseAln::TPos >::find_nc(), CSourceModParser::FindAllMods(), CGFFReader::SRecord::FindAttribute(), CChainer::CChainerImpl::FindContainedAlignments(), CSourceModParser::FindMod(), CAlignCollapser::GetCollapsedAlgnments(), CModelClusterSet< Cluster >::Insert(), CPackString::Locate(), limited_size_map< string, CRef< CSlot > >::lower_bound(), limited_size_map< string, CRef< CSlot > >::operator[](), CPackString::Pack(), readGFF3(), SAlignExtended::SAlignExtended(), CRNANameCompleter::Start(), and CTaxonTextCompleter::Start().
◆ operator<()
◆ operator=()
◆ operator==()
◆ RLock()
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Definition at line 54 of file set.hpp.
Referenced by set< ETranslationFrame >::operator<(), and set< ETranslationFrame >::operator==().
◆ RUnlock()
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Definition at line 59 of file set.hpp.
Referenced by set< ETranslationFrame >::operator<(), and set< ETranslationFrame >::operator==().
◆ size()
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Definition at line 132 of file set.hpp.
Referenced by CArgs::Add(), CServer_ConnectionPool::Add(), CGBProjectHelper::AddProjectItemsFromRID(), AddSupport(), CRemoveFeaturesDlg::ApplyToCSeq_entry(), CCassPrm::AssignSet(), CCassQuery::BindSet(), BOOST_AUTO_TEST_CASE(), CThreadPool_Impl::CanDoExclusiveTask(), CollectDescriptors(), CDFamily::convergeTo(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CRemoveFeaturesDlg::CountProteinsBeforeRemoval(), CQueryDataPerChunk::CQueryDataPerChunk(), CBiosampleChkApp::CreateBiosampleUpdateWebService(), CAddFluComments::CreateNewComment(), python::CSelectConnPool::Destroy(), CSeqAnnotFromFasta::DetermineMasterIndex(), AlignmentUtility::DoLeaveNOut(), CSampleTest::DoTest(), python::CSelectConnPool::Empty(), CCdCore::EraseSequences(), CDFamily::findChildren(), CCyclicDepends::FindCyclesNew(), CObjectConverter::FindRelations(), CScope_Impl::GetBioseqHandle(), CPSGDataLoader_Impl::GetCDDAnnotsOnce(), CVariationUtilities::GetCommonRepeatUnit(), CSeqDB::GetDBMetaData(), CPhyloTree::GetExplicitlySelected(), CPhyloTree::GetExplicitlySelectedAndNotCollapsed(), CPhyloTree::GetExplicitlySelectedIDs(), CGapAnalysis::GetGapLengthSummary(), GetGoTermErrors(), CBlockingQueue< TRequest >::GetHandle(), CBioTreeContainer::GetLeafCount(), CCassConnection::GetLocalPeersAddressList(), CClusterDBSource::GetNext(), CPhyloTree::GetNumSelected(), CSeqDBGiList::GetNumTaxIds(), CSeqDBNegativeList::GetNumTaxIds(), CCrossPanelIR::GetObjectSelection(), CHitMatrixPane::GetObjectSelection(), CSelectionVisitor::GetObjectSelection(), CPhyloTree::GetSelected(), CPhyloTree::GetSelectedBoundary(), CPhyloTree::GetSelectedIDs(), CCache< string, CRef< CTaxon3_reply > >::GetSize(), CBlast_def_line::GetTaxIds(), CArgAllow_Int8s::GetUsage(), CArgAllow_Integers::GetUsage(), CArgAllow_Doubles::GetUsage(), CFeatureGenerator::SImplementation::HasMixedGenomicIds(), CPhyloTree::HasSelection(), CWriteDB_TaxID::InsertEntries(), IsCapNameCorrect(), CStructFieldValuePanel::ListStructCommentFields(), CCompoundRWRegistry::LoadBaseRegistries(), CAlignFilter::Match(), CReportNode::Merge(), CTreeAlignMerger::Merge_AllAtOnce(), CTreeAlignMerger::Merge_Pairwise(), LowSupport_Noncoding::model_predicate(), CSeqDBLMDB::NegativeTaxIdsToOids(), CSeqDBLMDBSet::NegativeTaxIdsToOids(), CAlignCompare::NextGroup(), CInfluenzaSet::OkToMakeSet(), CPhyloTreeWidget::OnCollapseToViewport(), CVcfColumnSelectionPanel::OnDeselectAllClick(), CFindEditSequence::OnNext(), CVcfColumnSelectionPanel::OnSelectAllClick(), CSuspectProductRulesEditor::OnShowDiffs(), CAppDialogs::OpenViewlDialog(), CFastaReader::ParseGapLine(), CBlastFormatterApp::PrintFormattedOutput(), CObjectsSniffer::ProbeAny(), CDataTool::ProcessData(), CBlockingQueue< TRequest >::Put(), CHugeFileValidator::ReportGlobalErrors(), CThreadPool_Impl::RequestSuspend(), CThreadedApp::Run(), CMultiApplication::Run(), CSampleNetScheduleNode::Run(), CFeatTreeSampleApp::Run(), s_AnalyzeLibraryOrder(), NAdapterSearch::CSimpleUngappedAligner::s_CoordSetToMapIndex(), s_Extract(), s_GetAlignmentContent(), s_IncludeDefline_NegativeTaxid(), s_IncludeDefline_Taxid(), s_IncludeDeflineTaxid(), s_LimitDeflines(), s_PopulateExtSet(), s_ProcessTaxIdFilters(), s_ReadServerParams(), s_Render_SeqAlign(), s_ReportDuplicateIds(), CNCBlobAccessor::SetFailedWriteCount(), CMultiAligner::SetInputMSAs(), CTextPanelContext::SetSelectedObjects(), CRangeSet< CPairwiseAln::TPos >::size(), CAnnot_CI::size(), limited_resource_map< TVDBRowId, CRef< SAmbiguityInfo >, size_t >::size(), limited_size_map< string, CRef< CSlot > >::size(), ColumnResidueProfile::sumUpColumnWeightsByRow(), SeqSwapper::swapSequences(), CSeqDBLMDBSet::TaxIdsToOids(), CDbTest::Test(), CDirTest::Test(), CThreadedApp::TestApp_DelayedStartSyncPoint(), CThreadedApp::TestApp_GlobalSyncPoint(), CMacroFunction_CreateProteinFeats::TheFunction(), CThreadPool_Impl::ThreadStateChanged(), TraverseAndRunTestCases(), CCmdAddSeqEntry::Unexecute(), CGtfAttributes::ValueOf(), CNCBlobStorage::WriteBlobStat(), CWriteDB_Volume::WriteSequence(), CEditObjectSeq_feat::x_AdjustCircularGene(), CEditObjectSeq_feat::x_AdjustGene(), CCleanupAlignmentsToolManager::x_AreSelfAlignmentsOnly(), CAlignCleanup::x_Cleanup_AnchoredAln(), CPsiBlastInputData::x_CountAndSelectQualifyingAlignments(), CMergeTree::x_CountChildLinks(), CPhrap_Contig::x_CreateSeq_align(), CSrcTablePrimerColumn::x_DoesPrimerSetHaveSpace(), CQueueDataBase::x_Dump(), CArgDependencyGroup::x_Evaluate(), CColumnarVCFReader::x_GatherSampleColNames(), CVecscreen::x_GetAllDropIdsForKeepId(), CAlgoToolManagerBase::x_GetDataLocker(), CSequenceSearchJob::x_GetMatches(), CAlnTableDS::x_GetNumSeqs(), CThreadPool_Impl::x_HasNoThreads(), CBlockingQueue< CRef< CStdRequest > >::x_HungerSemPred(), CSubPrep_panel::x_IsSequencingTechnologyRequired(), CQueueDataBase::x_Open(), CBlastDBCmdApp::x_PrintBlastDatabaseTaxInformation(), CAsn2FastaApp::x_ProcessIStream(), CCleanupHugeAsnReader::x_PruneIfSegsMissing(), CNSClientsRegistry::x_PurgeWNodesAndReaders(), CBlockingQueue< CRef< CStdRequest > >::x_PutSemPred(), CNewCleanup_imp::x_RemovePub(), CSequenceSearchJob::x_SearchSequence(), CFeatureGenerator::SImplementation::x_SetComment(), CNewCleanup_imp::x_SingleSeqSetToSeq(), CAlnMultiDSBuilder::x_TestAlignments(), CAutodefFeatClausePanel::x_UpdateSuppressedFeatureTypeList(), and CAssignColumnValueDlg::x_UpdateValues().
◆ swap()
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Definition at line 102 of file set.hpp.
Referenced by CWorkerNodeCleanup::CallEventHandlers(), CDataLoader::GetExternalAnnotRecords(), CGBDataLoader_Native::GetExternalAnnotRecordsNA(), CDataLoader::GetExternalRecords(), CGBDataLoader_Native::GetExternalRecords(), CDataLoader::GetOrphanAnnotRecordsNA(), CSeqDBLMDBSet::NegativeTaxIdsToOids(), CFindEditSequence::SetHighlights(), CSeqDBLMDBSet::TaxIdsToOids(), and CFeatureTableReader_Imp::x_CreateGenesFromCDSs().
◆ upper_bound() [1/2]
◆ upper_bound() [2/2]
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Definition at line 139 of file set.hpp.
Referenced by CAlignCompare::SAlignment::BreakOnBoundaries(), CChainer::CChainerImpl::FindContainedAlignments(), CAlignCollapser::GetCollapsedAlgnments(), CModelClusterSet< Cluster >::Insert(), SAlignExtended::SAlignExtended(), and limited_size_map< string, CRef< CSlot > >::upper_bound().
◆ WLock()
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Definition at line 64 of file set.hpp.
Referenced by set< ETranslationFrame >::operator=(), set< ETranslationFrame >::swap(), and set< ETranslationFrame >::~checked_set().
◆ WUnlock()
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Definition at line 69 of file set.hpp.
Referenced by set< ETranslationFrame >::operator=(), and set< ETranslationFrame >::swap().
Member Data Documentation
◆ m_RCounter
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Definition at line 157 of file set.hpp.
Referenced by set< ETranslationFrame >::RLock(), set< ETranslationFrame >::RUnlock(), set< ETranslationFrame >::WLock(), and set< ETranslationFrame >::WUnlock().
◆ m_WCounter
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mutableprivate |
Definition at line 156 of file set.hpp.
Referenced by set< ETranslationFrame >::RLock(), set< ETranslationFrame >::RUnlock(), set< ETranslationFrame >::WLock(), and set< ETranslationFrame >::WUnlock().
The documentation for this class was generated from the following file:
- include/util/debug/set.hpp
