NCBI C++ ToolKit
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CGencollService Class Reference

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+ Inheritance diagram for CGencollService:
+ Collaboration diagram for CGencollService:

Public Member Functions

 CGencollService (const string &cgi_url, bool nocache)
 
 CGencollService (bool nocache)
 
 CGencollService (const CArgs &args)
 
- Public Member Functions inherited from CGenomicCollectionsService
 CGenomicCollectionsService (const string &cache_file="")
 
 CGenomicCollectionsService (const CArgs &args)
 
 ~CGenomicCollectionsService ()
 
CRef< CGC_AssemblyGetAssembly (const string &acc, const string &mode)
 
CRef< CGC_AssemblyGetAssembly (int releaseId, const string &mode)
 
string ValidateChrType (const string &chrType, const string &chrLoc)
 
CRef< CGCClient_AssemblyInfoFindOneAssemblyBySequences (const string &sequence_acc, int filter, CGCClient_GetAssemblyBySequenceRequest::ESort sort=CGCClient_GetAssemblyBySequenceRequest::eSort_default)
 Find assembly by sequence accession. More...
 
CRef< CGCClient_AssemblySequenceInfoFindOneAssemblyBySequences (const list< string > &sequence_acc, int filter, CGCClient_GetAssemblyBySequenceRequest::ESort sort=CGCClient_GetAssemblyBySequenceRequest::eSort_default, bool with_roles=false)
 Find assembly by sequence accessions. More...
 
CRef< CGCClient_AssembliesForSequencesFindAssembliesBySequences (const string &sequence_acc, int filter, CGCClient_GetAssemblyBySequenceRequest::ESort sort=CGCClient_GetAssemblyBySequenceRequest::eSort_default, bool with_roles=false)
 Find assemblies by sequence accession. More...
 
CRef< CGCClient_AssembliesForSequencesFindAssembliesBySequences (const list< string > &sequence_acc, int filter, CGCClient_GetAssemblyBySequenceRequest::ESort sort=CGCClient_GetAssemblyBySequenceRequest::eSort_default, bool with_roles=false)
 Find assemblies by sequence accessions. More...
 
CRef< CGCClient_EquivalentAssembliesGetEquivalentAssemblies (const string &acc, int equivalency)
 
- Public Member Functions inherited from CGenomicCollectionsService_Base
 CGenomicCollectionsService_Base (void)
 
virtual ~CGenomicCollectionsService_Base (void)
 
virtual void Ask (const TRequest &request, TReply &reply)
 
virtual void Ask (const TRequest &request, TReply &reply, TReplyChoice::E_Choice wanted)
 
virtual string AskGet_chrtype_valid (const CGCClient_ValidateChrTypeLocRequest &req, TReply *reply=0)
 
virtual CRef< CGCClient_EquivalentAssembliesAskGet_equivalent_assemblies (const CGCClient_GetEquivalentAssembliesRequest &req, TReply *reply=0)
 
virtual vector< char > AskGet_assembly_blob (const CGCClient_GetAssemblyBlobRequest &req, TReply *reply=0)
 
virtual CRef< CGCClient_AssembliesForSequencesAskGet_assembly_by_sequence (const CGCClient_GetAssemblyBySequenceRequest &req, TReply *reply=0)
 
- Public Member Functions inherited from CRPCClient< CGCClientRequest, CGCClientResponse >
 CRPCClient (const string &service=kEmptyStr)
 
 CRPCClient (const string &service, ESerialDataFormat format)
 
 CRPCClient (const string &service, ESerialDataFormat format, unsigned int try_limit)
 
virtual ~CRPCClient (void)
 
virtual void WriteRequest (CObjectOStream &out, const CGCClientRequest &request)
 
virtual void ReadReply (CObjectIStream &in, CGCClientResponse &reply)
 
EIO_Status SetTimeout (const STimeout *timeout, EIO_Event direction=eIO_ReadWrite)
 
const STimeoutGetTimeout (EIO_Event direction=eIO_Read) const
 
EIO_Status AsyncConnect (void *handle_buf, size_t handle_size)
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 
- Public Member Functions inherited from CRPCClient_Base
 CRPCClient_Base (const string &service, ESerialDataFormat format)
 
 CRPCClient_Base (const string &service, ESerialDataFormat format, unsigned int try_limit)
 
virtual ~CRPCClient_Base (void)
 
void Connect (void)
 
void Disconnect (void)
 
void Reset (void)
 
void SetArgs (const string &args)
 Set additional connection arguments. More...
 
void SetArgs (const CUrlArgs &args)
 
const stringGetArgs (void) const
 Get additional connection arguments. More...
 
const stringGetService (void) const
 
void SetService (const string &service)
 
ESerialDataFormat GetFormat (void) const
 
void SetFormat (ESerialDataFormat fmt)
 
unsigned int GetTryLimit (void) const
 Get number of request attempts. More...
 
void SetTryLimit (unsigned int n)
 
unsigned int GetRetryLimit (void) const
 
void SetRetryLimit (unsigned int n)
 
const CTimeSpan GetRetryDelay (void) const
 Get retry delay. More...
 
void SetRetryDelay (const CTimeSpan &ts)
 
void SetCanceledCallback (const ICanceled *canceled)
 Set request canceler. More...
 
bool IsCanceled (void) const
 

Private Member Functions

virtual string x_GetURL ()
 
virtual void x_Connect ()
 These run with m_Mutex already acquired. More...
 

Private Attributes

const string cgiUrl
 

Additional Inherited Members

- Public Types inherited from CGenomicCollectionsService_Base
typedef CGCClientRequest TRequest
 
typedef CGCClientResponse TReply
 
typedef TRequest TRequestChoice
 
typedef TReply TReplyChoice
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Member Functions inherited from CGenomicCollectionsService
static void AddArguments (CArgDescriptions &arg_desc)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CRPCClient< CGCClientRequest, CGCClientResponse >
virtual string GetAffinity (const CGCClientRequest &) const
 
virtual void x_WriteRequest (CObjectOStream &out, const CSerialObject &request) override
 
virtual void x_ReadReply (CObjectIStream &in, CSerialObject &reply) override
 
virtual string x_GetAffinity (const CSerialObject &request) const override
 
void x_ConnectURL (const string &url)
 Connect to a URL. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 
- Protected Member Functions inherited from CRPCClient_Base
void SetAffinity (const string &affinity)
 
virtual void x_Disconnect (void)
 Disconnect as cleanly as possible. More...
 
void x_SetStream (CNcbiIostream *stream)
 
void x_Ask (const CSerialObject &request, CSerialObject &reply)
 
virtual bool x_ShouldRetry (unsigned int tries)
 
CTimeSpan x_GetRetryDelay (double max_delay) const
 
- Protected Member Functions inherited from CConnIniter
 CConnIniter (void)
 
- Static Protected Member Functions inherited from CRPCClient< CGCClientRequest, CGCClientResponse >
static EHTTP_HeaderParse sx_ParseHeader (const char *http_header, void *user_data, int server_error)
 
static bool sx_IsSpecial (const STimeout *timeout)
 
- Static Protected Member Functions inherited from CRPCClient_Base
static const char * GetContentTypeHeader (ESerialDataFormat format)
 
- Protected Attributes inherited from CRPCClient< CGCClientRequest, CGCClientResponse >
const STimeoutm_Timeout
 Cloned if not special. More...
 
- Protected Attributes inherited from CRPCClient_Base
string m_Service
 Used by default Connect(). More...
 
string m_Args
 
unique_ptr< CNcbiIostreamm_Stream
 
unique_ptr< CObjectIStreamm_In
 
unique_ptr< CObjectOStreamm_Out
 
string m_Affinity
 
unsigned int m_TryLimit
 
CHttpRetryContext m_RetryCtx
 
CConstIRef< ICanceledm_Canceler
 

Detailed Description

Definition at line 65 of file gc_cli.cpp.

Constructor & Destructor Documentation

◆ CGencollService() [1/3]

CGencollService::CGencollService ( const string cgi_url,
bool  nocache 
)
inline

Definition at line 68 of file gc_cli.cpp.

◆ CGencollService() [2/3]

CGencollService::CGencollService ( bool  nocache)
inline

Definition at line 73 of file gc_cli.cpp.

References CNcbiApplication::Instance(), and NStr::ToUpper().

◆ CGencollService() [3/3]

CGencollService::CGencollService ( const CArgs args)
inline

Definition at line 82 of file gc_cli.cpp.

Member Function Documentation

◆ x_Connect()

virtual void CGencollService::x_Connect ( void  )
inlineprivatevirtual

◆ x_GetURL()

virtual string CGencollService::x_GetURL ( )
inlineprivatevirtual

Definition at line 87 of file gc_cli.cpp.

Member Data Documentation

◆ cgiUrl

const string CGencollService::cgiUrl
private

Definition at line 104 of file gc_cli.cpp.


The documentation for this class was generated from the following file:
Modified on Thu Feb 22 17:15:11 2024 by modify_doxy.py rev. 669887