Search Toolkit Book for COrgName_Base
#include <objects/seqfeat/OrgName_.hpp>
Inheritance diagram for COrgName_Base:
Collaboration diagram for COrgName_Base:
Classes | |
| class | C_Name |
| C_Name –. More... | |
Public Types | |
| enum class | E_memberIndex { e__allMandatory = 0 , e_name , e_attrib , e_mod , e_lineage , e_gcode , e_mgcode , e_div , e_pgcode } |
| typedef C_Name | TName |
| typedef string | TAttrib |
| typedef list< CRef< COrgMod > > | TMod |
| typedef string | TLineage |
| typedef int | TGcode |
| typedef int | TMgcode |
| typedef string | TDiv |
| typedef int | TPgcode |
| typedef Tparent::CMemberIndex< E_memberIndex, 9 > | TmemberIndex |
| Public Types inherited from CObject | |
| enum | EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern } |
| Control filling of newly allocated memory. More... | |
| typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More... | |
| typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More... | |
| typedef Uint8 | TCount |
| Alias for value type of counter. More... | |
Public Member Functions | |
| COrgName_Base (void) | |
| virtual | ~COrgName_Base (void) |
| DECLARE_INTERNAL_TYPE_INFO () | |
| bool | IsSetName (void) const |
| Check if a value has been assigned to Name data member. More... | |
| bool | CanGetName (void) const |
| Check if it is safe to call GetName method. More... | |
| void | ResetName (void) |
| Reset Name data member. More... | |
| const TName & | GetName (void) const |
| Get the Name member data. More... | |
| void | SetName (TName &value) |
| Assign a value to Name data member. More... | |
| TName & | SetName (void) |
| Assign a value to Name data member. More... | |
| bool | IsSetAttrib (void) const |
| attribution of name Check if a value has been assigned to Attrib data member. More... | |
| bool | CanGetAttrib (void) const |
| Check if it is safe to call GetAttrib method. More... | |
| void | ResetAttrib (void) |
| Reset Attrib data member. More... | |
| const TAttrib & | GetAttrib (void) const |
| Get the Attrib member data. More... | |
| void | SetAttrib (const TAttrib &value) |
| Assign a value to Attrib data member. More... | |
| void | SetAttrib (TAttrib &&value) |
| TAttrib & | SetAttrib (void) |
| Assign a value to Attrib data member. More... | |
| bool | IsSetMod (void) const |
| Check if a value has been assigned to Mod data member. More... | |
| bool | CanGetMod (void) const |
| Check if it is safe to call GetMod method. More... | |
| void | ResetMod (void) |
| Reset Mod data member. More... | |
| const TMod & | GetMod (void) const |
| Get the Mod member data. More... | |
| TMod & | SetMod (void) |
| Assign a value to Mod data member. More... | |
| bool | IsSetLineage (void) const |
| lineage with semicolon separators Check if a value has been assigned to Lineage data member. More... | |
| bool | CanGetLineage (void) const |
| Check if it is safe to call GetLineage method. More... | |
| void | ResetLineage (void) |
| Reset Lineage data member. More... | |
| const TLineage & | GetLineage (void) const |
| Get the Lineage member data. More... | |
| void | SetLineage (const TLineage &value) |
| Assign a value to Lineage data member. More... | |
| void | SetLineage (TLineage &&value) |
| TLineage & | SetLineage (void) |
| Assign a value to Lineage data member. More... | |
| bool | IsSetGcode (void) const |
| genetic code (see CdRegion) Check if a value has been assigned to Gcode data member. More... | |
| bool | CanGetGcode (void) const |
| Check if it is safe to call GetGcode method. More... | |
| void | ResetGcode (void) |
| Reset Gcode data member. More... | |
| TGcode | GetGcode (void) const |
| Get the Gcode member data. More... | |
| void | SetGcode (TGcode value) |
| Assign a value to Gcode data member. More... | |
| TGcode & | SetGcode (void) |
| Assign a value to Gcode data member. More... | |
| bool | IsSetMgcode (void) const |
| mitochondrial genetic code Check if a value has been assigned to Mgcode data member. More... | |
| bool | CanGetMgcode (void) const |
| Check if it is safe to call GetMgcode method. More... | |
| void | ResetMgcode (void) |
| Reset Mgcode data member. More... | |
| TMgcode | GetMgcode (void) const |
| Get the Mgcode member data. More... | |
| void | SetMgcode (TMgcode value) |
| Assign a value to Mgcode data member. More... | |
| TMgcode & | SetMgcode (void) |
| Assign a value to Mgcode data member. More... | |
| bool | IsSetDiv (void) const |
| GenBank division code Check if a value has been assigned to Div data member. More... | |
| bool | CanGetDiv (void) const |
| Check if it is safe to call GetDiv method. More... | |
| void | ResetDiv (void) |
| Reset Div data member. More... | |
| const TDiv & | GetDiv (void) const |
| Get the Div member data. More... | |
| void | SetDiv (const TDiv &value) |
| Assign a value to Div data member. More... | |
| void | SetDiv (TDiv &&value) |
| TDiv & | SetDiv (void) |
| Assign a value to Div data member. More... | |
| bool | IsSetPgcode (void) const |
| plastid genetic code Check if a value has been assigned to Pgcode data member. More... | |
| bool | CanGetPgcode (void) const |
| Check if it is safe to call GetPgcode method. More... | |
| void | ResetPgcode (void) |
| Reset Pgcode data member. More... | |
| TPgcode | GetPgcode (void) const |
| Get the Pgcode member data. More... | |
| void | SetPgcode (TPgcode value) |
| Assign a value to Pgcode data member. More... | |
| TPgcode & | SetPgcode (void) |
| Assign a value to Pgcode data member. More... | |
| virtual void | Reset (void) |
| Reset the whole object. More... | |
| Public Member Functions inherited from CSerialObject | |
| CSerialObject (void) | |
| virtual | ~CSerialObject (void) |
| virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
| virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More... | |
| virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More... | |
| virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More... | |
| void | ThrowUnassigned (TMemberIndex index) const |
| void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
| bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More... | |
| const string & | GetNamespaceName (void) const |
| Get namespace name. More... | |
| bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More... | |
| const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More... | |
| Public Member Functions inherited from CObject | |
| CObject (void) | |
| Constructor. More... | |
| CObject (const CObject &src) | |
| Copy constructor. More... | |
| virtual | ~CObject (void) |
| Destructor. More... | |
| CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More... | |
| bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More... | |
| bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More... | |
| bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More... | |
| bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More... | |
| void | AddReference (void) const |
| Add reference to object. More... | |
| void | RemoveReference (void) const |
| Remove reference to object. More... | |
| void | ReleaseReference (void) const |
| Remove reference without deleting object. More... | |
| virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More... | |
| virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More... | |
| void * | operator new (size_t size) |
| Define new operator for memory allocation. More... | |
| void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More... | |
| void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More... | |
| void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More... | |
| void * | operator new (size_t size, void *place) |
| Define new operator. More... | |
| void | operator delete (void *ptr, void *place) |
| Define delete operator. More... | |
| void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More... | |
| void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More... | |
| Public Member Functions inherited from CDebugDumpable | |
| CDebugDumpable (void) | |
| virtual | ~CDebugDumpable (void) |
| void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
| void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
| void | DumpToConsole (void) const |
Private Types | |
| typedef CSerialObject | Tparent |
Private Member Functions | |
| COrgName_Base (const COrgName_Base &) | |
| COrgName_Base & | operator= (const COrgName_Base &) |
Private Attributes | |
| Uint4 | m_set_State [1] |
| CRef< TName > | m_Name |
| string | m_Attrib |
| list< CRef< COrgMod > > | m_Mod |
| string | m_Lineage |
| int | m_Gcode |
| int | m_Mgcode |
| string | m_Div |
| int | m_Pgcode |
Additional Inherited Members | |
| Static Public Member Functions inherited from CSerialObject | |
| static void | SetVerifyDataThread (ESerialVerifyData verify) |
| static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
| static string | UnassignedString (void) |
| static CStringUTF8 | UnassignedStringUTF8 (void) |
| static char | UnassignedByte (void) |
| Static Public Member Functions inherited from CObject | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More... | |
| static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
| static EAllocFillMode | GetAllocFillMode (void) |
| static void | SetAllocFillMode (EAllocFillMode mode) |
| static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More... | |
| Static Public Member Functions inherited from CDebugDumpable | |
| static void | EnableDebugDump (bool on) |
| Static Public Attributes inherited from CSerialObject | |
| static const char * | ms_UnassignedStr = "<*unassigned*>" |
| static const char | ms_UnassignedByte = char(0xcd) |
| Static Public Attributes inherited from CObject | |
| static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More... | |
| static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More... | |
| static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More... | |
| static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More... | |
| static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More... | |
| static const TCount | eCounterStateMask |
| Valid object, and object in heap. More... | |
| Protected Member Functions inherited from CObject | |
| virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More... | |
Detailed Description
Definition at line 80 of file OrgName_.hpp.
The documentation for this class was generated from the following files:
- include/objects/seqfeat/OrgName_.hpp
- src/objects/seqfeat/OrgName_.cpp
