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CRNA_ref Class Reference

Represents ASN.1 type RNA-ref defined in file seqfeat.asn

Search Toolkit Book for CRNA_ref

@RNA_ref.hpp User-defined methods of the data storage class. More...

#include <objects/seqfeat/RNA_ref.hpp>

+ Inheritance diagram for CRNA_ref:
+ Collaboration diagram for CRNA_ref:

Public Member Functions

 CRNA_ref (void)
 
 ~CRNA_ref (void)
 
string GetRnaProductName (void) const
 
void SetRnaProductName (const string &product, string &remainder)
 
- Public Member Functions inherited from CRNA_ref_Base
 CRNA_ref_Base (void)
 
virtual ~CRNA_ref_Base (void)
 
 DECLARE_INTERNAL_TYPE_INFO ()
 
bool IsSetType (void) const
 Check if a value has been assigned to Type data member. More...
 
bool CanGetType (void) const
 Check if it is safe to call GetType method. More...
 
void ResetType (void)
 Reset Type data member. More...
 
TType GetType (void) const
 Get the Type member data. More...
 
void SetType (TType value)
 Assign a value to Type data member. More...
 
TTypeSetType (void)
 Assign a value to Type data member. More...
 
bool IsSetPseudo (void) const
 Check if a value has been assigned to Pseudo data member. More...
 
bool CanGetPseudo (void) const
 Check if it is safe to call GetPseudo method. More...
 
void ResetPseudo (void)
 Reset Pseudo data member. More...
 
TPseudo GetPseudo (void) const
 Get the Pseudo member data. More...
 
void SetPseudo (TPseudo value)
 Assign a value to Pseudo data member. More...
 
TPseudoSetPseudo (void)
 Assign a value to Pseudo data member. More...
 
bool IsSetExt (void) const
 generic fields for ncRNA, tmRNA, miscRNA Check if a value has been assigned to Ext data member. More...
 
bool CanGetExt (void) const
 Check if it is safe to call GetExt method. More...
 
void ResetExt (void)
 Reset Ext data member. More...
 
const TExtGetExt (void) const
 Get the Ext member data. More...
 
void SetExt (TExt &value)
 Assign a value to Ext data member. More...
 
TExtSetExt (void)
 Assign a value to Ext data member. More...
 
virtual void Reset (void)
 Reset the whole object. More...
 
- Public Member Functions inherited from CSerialObject
 CSerialObject (void)
 
virtual ~CSerialObject (void)
 
virtual const CTypeInfoGetThisTypeInfo (void) const =0
 
virtual void Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive)
 Set object to copy of another one. More...
 
virtual bool Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const
 Check if both objects contain the same values. More...
 
virtual void DebugDump (CDebugDumpContext ddc, unsigned int depth) const
 Define method for dumping debug information. More...
 
void ThrowUnassigned (TMemberIndex index) const
 
void ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const
 
bool HasNamespaceName (void) const
 Check if object data type has namespace name. More...
 
const stringGetNamespaceName (void) const
 Get namespace name. More...
 
bool HasNamespacePrefix (void) const
 Check if data type has namespace prefix. More...
 
const stringGetNamespacePrefix (void) const
 Get namespace prefix. More...
 
- Public Member Functions inherited from CObject
 CObject (void)
 Constructor. More...
 
 CObject (const CObject &src)
 Copy constructor. More...
 
virtual ~CObject (void)
 Destructor. More...
 
CObjectoperator= (const CObject &src) THROWS_NONE
 Assignment operator. More...
 
bool CanBeDeleted (void) const THROWS_NONE
 Check if object can be deleted. More...
 
bool IsAllocatedInPool (void) const THROWS_NONE
 Check if object is allocated in memory pool (not system heap) More...
 
bool Referenced (void) const THROWS_NONE
 Check if object is referenced. More...
 
bool ReferencedOnlyOnce (void) const THROWS_NONE
 Check if object is referenced only once. More...
 
void AddReference (void) const
 Add reference to object. More...
 
void RemoveReference (void) const
 Remove reference to object. More...
 
void ReleaseReference (void) const
 Remove reference without deleting object. More...
 
virtual void DoNotDeleteThisObject (void)
 Mark this object as not allocated in heap – do not delete this object. More...
 
virtual void DoDeleteThisObject (void)
 Mark this object as allocated in heap – object can be deleted. More...
 
void * operator new (size_t size)
 Define new operator for memory allocation. More...
 
void * operator new[] (size_t size)
 Define new[] operator for 'array' memory allocation. More...
 
void operator delete (void *ptr)
 Define delete operator for memory deallocation. More...
 
void operator delete[] (void *ptr)
 Define delete[] operator for memory deallocation. More...
 
void * operator new (size_t size, void *place)
 Define new operator. More...
 
void operator delete (void *ptr, void *place)
 Define delete operator. More...
 
void * operator new (size_t size, CObjectMemoryPool *place)
 Define new operator using memory pool. More...
 
void operator delete (void *ptr, CObjectMemoryPool *place)
 Define delete operator. More...
 
- Public Member Functions inherited from CDebugDumpable
 CDebugDumpable (void)
 
virtual ~CDebugDumpable (void)
 
void DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const
 
void DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const
 
void DumpToConsole (void) const
 

Static Public Member Functions

static string GetRnaTypeName (const CRNA_ref::EType rna_type)
 
- Static Public Member Functions inherited from CRNA_ref_Base
static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() EType (void)
 Access to EType's attributes (values, names) as defined in spec. More...
 
- Static Public Member Functions inherited from CSerialObject
static void SetVerifyDataThread (ESerialVerifyData verify)
 
static void SetVerifyDataGlobal (ESerialVerifyData verify)
 
static string UnassignedString (void)
 
static CStringUTF8 UnassignedStringUTF8 (void)
 
static char UnassignedByte (void)
 
- Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (void)
 Define method to throw null pointer exception. More...
 
static NCBI_XNCBI_EXPORT void ThrowNullPointerException (const type_info &type)
 
static EAllocFillMode GetAllocFillMode (void)
 
static void SetAllocFillMode (EAllocFillMode mode)
 
static void SetAllocFillMode (const string &value)
 Set mode from configuration parameter value. More...
 
- Static Public Member Functions inherited from CDebugDumpable
static void EnableDebugDump (bool on)
 

Private Types

typedef CRNA_ref_Base Tparent
 

Private Member Functions

 CRNA_ref (const CRNA_ref &value)
 
CRNA_refoperator= (const CRNA_ref &value)
 

Additional Inherited Members

- Public Types inherited from CRNA_ref_Base
enum  EType {
  eType_unknown = 0 , eType_premsg = 1 , eType_mRNA = 2 , eType_tRNA = 3 ,
  eType_rRNA = 4 , eType_snRNA = 5 , eType_scRNA = 6 , eType_snoRNA = 7 ,
  eType_ncRNA = 8 , eType_tmRNA = 9 , eType_miscRNA = 10 , eType_other = 255
}
 type of RNA feature More...
 
enum class  E_memberIndex { e__allMandatory = 0 , e_type , e_pseudo , e_ext }
 
typedef EType TType
 
typedef bool TPseudo
 
typedef C_Ext TExt
 
typedef Tparent::CMemberIndex< E_memberIndex, 4 > TmemberIndex
 
- Public Types inherited from CObject
enum  EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
 Control filling of newly allocated memory. More...
 
typedef CObjectCounterLocker TLockerType
 Default locker type for CRef. More...
 
typedef atomic< Uint8TCounter
 Counter type is CAtomiCounter. More...
 
typedef Uint8 TCount
 Alias for value type of counter. More...
 
- Static Public Attributes inherited from CSerialObject
static const char * ms_UnassignedStr = "<*unassigned*>"
 
static const char ms_UnassignedByte = char(0xcd)
 
- Static Public Attributes inherited from CObject
static const TCount eCounterBitsCanBeDeleted = 1 << 0
 Define possible object states. More...
 
static const TCount eCounterBitsInPlainHeap = 1 << 1
 Heap signature was found. More...
 
static const TCount eCounterBitsPlaceMask
 Mask for 'in heap' state flags. More...
 
static const int eCounterStep = 1 << 2
 Skip over the "in heap" bits. More...
 
static const TCount eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
 Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
 
static const TCount eCounterStateMask
 Valid object, and object in heap. More...
 
- Protected Member Functions inherited from CObject
virtual void DeleteThis (void)
 Virtual method "deleting" this object. More...
 

Detailed Description

@RNA_ref.hpp User-defined methods of the data storage class.

This file was originally generated by application DATATOOL using the following specifications: 'seqfeat.asn'.

New methods or data members can be added to it if needed. See also: RNA_ref_.hpp

Definition at line 53 of file RNA_ref.hpp.

Member Typedef Documentation

◆ Tparent

Definition at line 55 of file RNA_ref.hpp.

Constructor & Destructor Documentation

◆ CRNA_ref() [1/2]

CRNA_ref::CRNA_ref ( void  )
inline

Definition at line 78 of file RNA_ref.hpp.

◆ ~CRNA_ref()

CRNA_ref::~CRNA_ref ( void  )

Definition at line 51 of file RNA_ref.cpp.

◆ CRNA_ref() [2/2]

CRNA_ref::CRNA_ref ( const CRNA_ref value)
private

Member Function Documentation

◆ GetRnaProductName()

string CRNA_ref::GetRnaProductName ( void  ) const

◆ GetRnaTypeName()

string CRNA_ref::GetRnaTypeName ( const CRNA_ref::EType  rna_type)
static

◆ operator=()

CRNA_ref& CRNA_ref::operator= ( const CRNA_ref value)
private

◆ SetRnaProductName()

void CRNA_ref::SetRnaProductName ( const string product,
string remainder 
)

The documentation for this class was generated from the following files:
Modified on Thu May 23 12:34:59 2024 by modify_doxy.py rev. 669887