Search Toolkit Book for CTreeBoundaryNode

#include <gui/widgets/phylo_tree/tree_graphics_model.hpp>

Inheritance diagram for CTreeBoundaryNode:

Collaboration diagram for CTreeBoundaryNode:

Public Member Functions
	CTreeBoundaryNode (CPhyloTree *t)

virtual	~CTreeBoundaryNode ()

void	SetScheme (CPhyloTreeScheme &sl)

void	SetPane (const CGlPane &p)

void	SetIncludeLabels (bool b)

void	Clear ()

vector< size_t > &	GetNodes ()

void	RenderPdf (CRef< CPdf > &pdf)

Public Member Functions inherited from CGlRenderNode
	CGlRenderNode ()
	ctor More...

virtual void	Render ()
	Set state and call x_Render() to render geometry. More...

void	SetState (CGlState *state)
	Set/get current OpenGL state. More...

CGlState &	GetState ()

CGlState const &	GetState () const

void	SetVisible (bool b)
	Set/get node visibility. More...

bool	IsVisible () const

void	SkipTarget (ERenderTarget target, bool skip)
	Turn off visibility for individual render targets. More...

bool	IsSkipped (ERenderTarget target) const

void	SetDefaultPosition ()
	Set 1 transformation and have it be the identity matrix. More...

void	SetPosition (const CMatrix4< float > &mat)
	Set 1 transformation and have it be "mat". More...

void	AddPosition (const CMatrix4< float > &mat)
	Add a new position. More...

void	SetRotationZ (float a)
	Apply scale-dependent rotation (radians) around z (to all instances) More...

void	SetPixelOffset (const CVect2< float > &off)
	Set/Get offset in pixels. More...

CVect2< float >	GetPixelOffset () const

vector< CMatrix4< float > > &	GetPositions ()
	return the current set of transformations for thisnode More...

void	ClearPositions ()

CMatrix4< float >	GetTransformedPosition (size_t idx)
	return the position with rotation and pixel offset baked in More...

Public Member Functions inherited from CGlObject
	CGlObject ()

	CGlObject (const string &name)

void	SetName (const string &name)

string	GetName () const

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Protected Member Functions
virtual void	x_Render ()
	Does actual rendering work. More...

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Attributes
vector< size_t >	m_BoundaryNodes
	Vector of all nodes that have a boundary defined. More...

CPhyloTree *	m_Tree

CRef< CPhyloTreeScheme >	m_SL

CGlPane	m_Pane

bool	m_IncludeLabels

Protected Attributes inherited from CGlRenderNode
bool	m_Visible
	If false, do not render node contents. More...

vector< ERenderTarget >	m_SkippedTargets
	Set of rendering targets for which this node will not be rendered even if m_Visible is true. More...

CRef< CGlState >	m_State
	OpenGL state. More...

vector< CMatrix4< float > >	m_Positions
	Set of positions (transformations) at which to render this node. More...

CVect2< float >	m_PixelOffset
	Pixel offset to apply to object. More...

float	m_RotAngleZ
	Optional rotation angle to rotate object around Z axis. More...

Protected Attributes inherited from CGlObject
string	m_Name
	Object name. More...

Additional Inherited Members
Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Detailed Description

class CTreeBoundaryNode

Definition at line 53 of file tree_graphics_model.hpp.

Constructor & Destructor Documentation

◆ CTreeBoundaryNode()

CTreeBoundaryNode::CTreeBoundaryNode ( CPhyloTree * t )

inline

Definition at line 55 of file tree_graphics_model.hpp.

◆ ~CTreeBoundaryNode()

virtual CTreeBoundaryNode::~CTreeBoundaryNode ( )

inlinevirtual

Definition at line 57 of file tree_graphics_model.hpp.

Member Function Documentation

◆ Clear()

void CTreeBoundaryNode::Clear ( void )

inline

Definition at line 64 of file tree_graphics_model.hpp.

References m_BoundaryNodes.

Referenced by CTreeGraphicsModel::ClearArrays().

◆ GetNodes()

vector<size_t>& CTreeBoundaryNode::GetNodes ( )

inline

Definition at line 65 of file tree_graphics_model.hpp.

References m_BoundaryNodes.

Referenced by IPhyloTreeRender::x_RenderNodeVbo().

◆ RenderPdf()

void CTreeBoundaryNode::RenderPdf ( CRef< CPdf > & pdf )

◆ SetIncludeLabels()

void CTreeBoundaryNode::SetIncludeLabels ( bool b )

inline

Definition at line 62 of file tree_graphics_model.hpp.

References b, and m_IncludeLabels.

Referenced by CTreeGraphicsModel::Render(), and CTreeGraphicsModel::RenderPDF().

◆ SetPane()

void CTreeBoundaryNode::SetPane ( const CGlPane & p )

inline

Definition at line 60 of file tree_graphics_model.hpp.

References m_Pane.

Referenced by CTreeGraphicsModel::Render(), and CTreeGraphicsModel::RenderPDF().

◆ SetScheme()

void CTreeBoundaryNode::SetScheme ( CPhyloTreeScheme & sl )

inline

Definition at line 59 of file tree_graphics_model.hpp.

References m_SL, and CRef< C, Locker >::Reset().

Referenced by CTreeGraphicsModel::Init(), and CTreeGraphicsModel::SetScheme().

◆ x_Render()

void CTreeBoundaryNode::x_Render ( void )

protectedvirtual

Does actual rendering work.

Reimplemented from CGlRenderNode.

Definition at line 61 of file tree_graphics_model.cpp.

References CPhyloNodeData::eHideChildren, CPhyloTreeScheme::eHighlightSelection, CPhyloNodeData::eSelected, CPhyloTreeScheme::GetNonSelectedAlpha(), CGlState::GetScaleFactor(), CPhyloTreeScheme::GetSelectionVisibility(), CGlPane::GetVisibleRect(), i, CGlRenderNode::IsVisible(), m_BoundaryNodes, m_IncludeLabels, m_Pane, m_SL, CGlRenderNode::m_State, CVect2< T >::X(), and CVect2< T >::Y().

Member Data Documentation

◆ m_BoundaryNodes

vector<size_t> CTreeBoundaryNode::m_BoundaryNodes

protected

Vector of all nodes that have a boundary defined.

Definition at line 75 of file tree_graphics_model.hpp.

Referenced by Clear(), GetNodes(), RenderPdf(), and x_Render().

◆ m_IncludeLabels

bool CTreeBoundaryNode::m_IncludeLabels

protected

Definition at line 83 of file tree_graphics_model.hpp.

Referenced by SetIncludeLabels(), and x_Render().

◆ m_Pane

CGlPane CTreeBoundaryNode::m_Pane

protected

Definition at line 81 of file tree_graphics_model.hpp.

Referenced by RenderPdf(), SetPane(), and x_Render().

◆ m_SL

CRef<CPhyloTreeScheme> CTreeBoundaryNode::m_SL

protected

Definition at line 79 of file tree_graphics_model.hpp.

Referenced by RenderPdf(), SetScheme(), and x_Render().

◆ m_Tree

CPhyloTree* CTreeBoundaryNode::m_Tree

protected

Definition at line 77 of file tree_graphics_model.hpp.

The documentation for this class was generated from the following files:

include/gui/widgets/phylo_tree/tree_graphics_model.hpp
src/gui/widgets/phylo_tree/tree_graphics_model.cpp

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CTreeBoundaryNode()

◆ ~CTreeBoundaryNode()

Member Function Documentation

◆ Clear()

◆ GetNodes()

◆ RenderPdf()

◆ SetIncludeLabels()

◆ SetPane()

◆ SetScheme()

◆ x_Render()

Member Data Documentation

◆ m_BoundaryNodes

◆ m_IncludeLabels

◆ m_Pane

◆ m_SL

◆ m_Tree