#include <ncbi_pch.hpp>#include <corelib/test_boost.hpp>#include <objects/seqalign/Seq_align.hpp>#include <objects/general/Object_id.hpp>#include <algo/align/util/collection_score.hpp>#include <objmgr/object_manager.hpp>#include <objmgr/scope.hpp>#include <objtools/data_loaders/genbank/gbloader.hpp>#include <serial/serial.hpp>#include <serial/objistr.hpp>#include <cmath>#include <sstream>#include <common/test_assert.h>
Include dependency graph for collection_scores_unit_test.cpp:
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Functions | |
| USING_SCOPE (objects) | |
| static string | MakeKey (CScoreValue const &) |
| static string | MakeKey (CSeq_align const &, string const &) |
| NCBITEST_INIT_CMDLINE (arg_desc) | |
| BOOST_AUTO_TEST_CASE (Test_AlignmentColl) | |
Variables | |
| USING_NCBI_SCOPE | |
Function Documentation
◆ BOOST_AUTO_TEST_CASE()
| BOOST_AUTO_TEST_CASE | ( | Test_AlignmentColl | ) |
Definition at line 93 of file collection_scores_unit_test.cpp.
References abs, CScope::AddDefaults(), CScope::AddTopLevelSeqEntry(), all, epsilon, CSeq_align_set_Base::Get(), CNcbiApplicationAPI::GetArgs(), IAlignmentCollectionScore::GetInstance(), CObjectManager::GetInstance(), i, map_checker< Container >::insert(), CNcbiApplication::Instance(), ncbi::grid::netcache::search::fields::key, MakeKey(), MSerial_AsnBinary, MSerial_AsnText, names, om, CSeq_align_set_Base::Set(), tmp, and rapidjson::value.
◆ MakeKey() [1/2]
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static |
Definition at line 203 of file collection_scores_unit_test.cpp.
References rapidjson::value.
Referenced by AtomSet::AtomSet(), and BOOST_AUTO_TEST_CASE().
◆ MakeKey() [2/2]
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static |
Definition at line 214 of file collection_scores_unit_test.cpp.
References CSeq_id::AsFastaString(), and CSeq_align::GetSeq_id().
◆ NCBITEST_INIT_CMDLINE()
| NCBITEST_INIT_CMDLINE | ( | arg_desc | ) |
Definition at line 72 of file collection_scores_unit_test.cpp.
References CArgDescriptions::eInputFile, and CArgDescriptions::fBinary.
◆ USING_SCOPE()
| USING_SCOPE | ( | objects | ) |
Variable Documentation
◆ USING_NCBI_SCOPE
| USING_NCBI_SCOPE |
Definition at line 66 of file collection_scores_unit_test.cpp.
