NCBI C++ ToolKit
Classes | Enumerations | Functions
njn_matrix.hpp File Reference
#include <corelib/ncbitype.h>
#include <assert.h>
#include "njn_approx.hpp"
#include "njn_doubletype.hpp"
#include "njn_ioutil.hpp"
#include "njn_vector.hpp"
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Classes

class  Matrix< T >
 

Enumerations

enum  Format {
  HUMAN , MACHINE , FORMAT , GENERAL ,
  SYMMETRIC , FORMAT
}
 

Functions

Format getFormat ()
 
void setFormat (Format format_)
 
Format clearFormat ()
 
template<typename T >
bool operator== (const Njn::Matrix< T > &matrix_, const Njn::Matrix< T > &matrix0_)
 
template<typename S , typename T >
void copy (Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)
 
template<typename T >
std::ostream & operator<< (std::ostream &ostr_, const Njn::Matrix< T > &matrix_)
 
template<typename T >
std::istream & operator>> (std::istream &istr_, Njn::Matrix< T > &matrix_)
 
std::ostream & operator<< (std::ostream &ostr_, Njn::MatrixIO::Format format_)
 
std::istream & operator>> (std::istream &istr_, Njn::MatrixIO::Format format_)
 

Enumeration Type Documentation

◆ Format

enum Format
Enumerator
HUMAN 
MACHINE 
FORMAT 
GENERAL 
SYMMETRIC 
FORMAT 

Definition at line 115 of file njn_matrix.hpp.

Function Documentation

◆ clearFormat()

Format clearFormat ( )

◆ copy()

template<typename S , typename T >
void copy ( Njn::Matrix< S > *  matrix_,
const Njn::Matrix< T > &  matrix0_ 
)

Definition at line 613 of file njn_matrix.hpp.

References i, and S.

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CleanupHugeFileCommand(), CleanVisString(), UngappedAlignedBlock::Clone(), UnalignedBlock::Clone(), SequenceDisplay::Clone(), NDirectNetStorageImpl::CObj::Clone(), BlockMultipleAlignment::Clone(), CMacroEditorContext::CMacroEditorContext(), CMsvcPrjProjectContext::CMsvcPrjProjectContext(), CollectDllsDepends(), CollectUserField(), CSimpleMakeFileContents::CollectValues(), TQueryMessages::Combine(), NVcfUtil::ConvertFromPreviousVCFModel(), DynProgProb::copy(), DynProgProbLim::copy(), LocalMaxStat::copy(), LocalMaxStatMatrix::copy(), CSyncQueue< Type, Container, Traits >::CopyTo(), CPacked_seqpnt::CPacked_seqpnt(), CSubjectsSequenceCoverage::Create(), CreateDllBuildTree(), CreateDllsList(), CMsvcPrjProjectContext::CreateLibsList(), CGraphTrack::CreateOverlay(), CSequenceEditingEventHandler::CreateSeqSubmit(), CTableDataAlnSummary::CTableDataAlnSummary(), CMSPeak::CullAll(), CMSPeak::CullChargeAndWhich(), CCleanup::DecodeXMLMarkChanged(), CMsvcPrjProjectContext::Defines(), deflate(), 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CPhyloTree::GetExplicitlySelected(), CValidator::CCacheImpl::GetFeatFromCacheMulti(), CScorematPssmConverter::GetGaplessColumnWeights(), CGlyphContainer::GetHTMLActiveAreas(), CSelectionEvent::GetIndexed(), CScorematPssmConverter::GetInformationContent(), CProjectItemsTree::GetInternalDepends(), CScorematPssmConverter::GetIntervalSizes(), CMsvcSite::GetLibChoiceIncludes(), CMsvcSite::GetLibInclude(), CCassConnection::GetLocalPeersAddressList(), CUIToolRegistry::GetMRUToolNames(), CMacroEditorContext::GetncRNAClassTypes(), CScorematPssmConverter::GetNumMatchingSeqs(), CProjectService::GetObjProjects(), GetProtRefAnnot(), CPssm::GetQuerySequenceData(), CPhyloTree::GetSelected(), CBlastSequenceSource::GetSeq(), CEditSequence::GetSequence(), CScorematPssmConverter::GetSigma(), CRegistryReadView::GetStringList(), CGuiRegistry::GetStringList(), CSettingsSet::GetStringVec(), CNWAligner::GetTranscript(), CGeneralCommentField::GetVals(), gz_write(), gzwrite(), HEAP_Copy(), Vector< T >::in(), 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CTrackConfigManager::MergeTrackConfig(), Nlm_MemDup(), CAppPackagesDlg::OnOkClick(), DeBruijn::IntegerTemplate< LargeInt< 1 >, LargeInt< 2 >, LargeInt< 4 >, LargeInt< 8 >, LargeInt< 16 > >::cast_from_other::operator()(), tree< T, tree_node_allocator >::pre_order_iterator::operator++(), tree< T, tree_node_allocator >::post_order_iterator::operator++(), tree< T, tree_node_allocator >::fixed_depth_iterator::operator++(), tree< T, tree_node_allocator >::sibling_iterator::operator++(), CConstResizingIterator< TSeq, TOut >::operator++(), CResizingIterator< TSeq, TVal >::operator++(), tree< T, tree_node_allocator >::pre_order_iterator::operator--(), tree< T, tree_node_allocator >::post_order_iterator::operator--(), tree< T, tree_node_allocator >::fixed_depth_iterator::operator--(), tree< T, tree_node_allocator >::sibling_iterator::operator--(), CNcbiArguments::operator=(), DynProgProb::operator=(), DynProgProbLim::operator=(), LocalMaxStat::operator=(), LocalMaxStatMatrix::operator=(), Matrix< T >::operator=(), Vector< T >::operator=(), CNewCleanup_imp::OrgrefBC(), PSSMWrapper::OutputPSSM(), rapidjson::GenericReader< SourceEncoding, TargetEncoding, StackAllocator >::ParseNumber(), rapidjson::GenericReader< SourceEncoding, TargetEncoding, StackAllocator >::ParseString(), PLibExclude::PLibExclude(), CPrefetchSeqDescr::PrefetchSeqDescr(), CEnumDataType::PrintJSONSchema(), CBiosampleChkApp::ProcessBioseqForUpdate(), PSourcesExclude::PSourcesExclude(), QSbuf_To_Single_Qscore_SeqGraph(), CBLASTToolManager::QuickLaunch(), CSplignTool::QuickLaunch(), rapidjson::BaseReaderHandler< typename SchemaDocumentType::SchemaType::EncodingType >::RawNumber(), rapidjson::GenericDocument< Encoding, Allocator, StackAllocator >::RawNumber(), rapidjson::GenericSchemaValidator< SchemaDocumentType, OutputHandler, StateAllocator >::RawNumber(), rapidjson::PrettyWriter< OutputStream, SourceEncoding, TargetEncoding, StackAllocator, writeFlags >::RawNumber(), rapidjson::Writer< OutputStream, UTF8<>, UTF8<>, CrtAllocator, kWriteDefaultFlags >::RawNumber(), RemapAlignToLoc(), RemoveOverlaps(), CProjectTask::RemoveProjects(), CSymResolver::Resolve(), CProjSRCResolver::ResolveTo(), revcmp(), CAgpFastaComparator::Run(), CAlnBuildApp::Run(), s_AddPartToSegmentedBioseq(), s_AddProjItemToDll(), s_AddSitesToAnnot(), s_AnalyzeLibraryOrder(), s_BlastGapAlignStruct_Copy(), s_BlastGapAlignStruct_Free(), s_BlastScoreBlk_Copy(), s_BlastScoreBlk_Free(), s_BuildGetSeqPartsRequest(), s_CArgs_ReadFromFile(), s_CheckGiToGeneConsistency(), s_CleanVisString(), CSplign::s_ComputeStats(), s_CopyProtXrefToProtFeat(), s_CopyVector(), variation::CVariationUtil::s_FindLocationProperties(), CPubEquivCleaner::s_Flatten(), s_FormatRegularSequencePiece(), s_GetAuthorsString(), s_GetMaskLoc(), s_GetQuerySequenceData(), s_HTMLizeExperimentQual(), s_InitVDBVersion(), s_MoveNonDuplicatedItems(), s_Ncbi2naExpandRevCmp(), s_PcrPrimerSetCompare(), s_ReadConfig(), s_Render_Feat_Evidence(), CHitFilter< THit 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CParseToBsrcTreeItemData::x_AddParamPanel(), CParseBsrcToStructCommTreeItemData::x_AddParamPanel(), CRmvOutsideQualTreeItemData::x_AddParamPanel(), CRmvOutsideBsrcTreeItemData::x_AddParamPanel(), CRmvOutsideStrCommQualTreeItemData::x_AddParamPanel(), CRmvOutsideRNAQualTreeItemData::x_AddParamPanel(), CRmvOutsideProteinQualTreeItemData::x_AddParamPanel(), CRmvOutsideFeatQualTreeItemData::x_AddParamPanel(), CSwapBsrcTreeItemData::x_AddParamPanel(), CFeatureItem::x_AddQualsRegion(), CSeqDictionaryBuilder< Alphabet >::x_AddSequence(), CNWAligner::x_Align(), CTraversalMerger::CNodeLabeler::x_AppendDirectNodeLabel(), CSequenceUpdater::x_ChangeIDInFeature(), CMakeProfileDBApp::x_CheckDelta(), CCmdCleanup::x_CreateActionCmd(), CCmdPlaceProteinFeats::x_CreateActionCmd(), CVcfLoadingJob::x_CreateColumnarVCFProjectItem(), CProSplignTool::x_CreateLoadingJob(), CSplignTool::x_CreateLoadingJob(), CCleanupAlignmentsJob::x_CreateProjectItems(), CAppHitFilter::x_DoMultiple(), 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◆ getFormat()

Format getFormat ( )

◆ operator<<() [1/2]

template<typename T >
std::ostream & operator<< ( std::ostream &  ostr_,
const Njn::Matrix< T > &  matrix_ 
)

Definition at line 640 of file njn_matrix.hpp.

◆ operator<<() [2/2]

std::ostream & operator<< ( std::ostream &  ostr_,
Njn::MatrixIO::Format  format_ 
)
inline

Definition at line 647 of file njn_matrix.hpp.

References setFormat().

◆ operator==()

template<typename T >
bool operator== ( const Njn::Matrix< T > &  matrix_,
const Njn::Matrix< T > &  matrix0_ 
)

Definition at line 626 of file njn_matrix.hpp.

References i.

◆ operator>>() [1/2]

template<typename T >
std::istream & operator>> ( std::istream &  istr_,
Njn::Matrix< T > &  matrix_ 
)

Definition at line 644 of file njn_matrix.hpp.

◆ operator>>() [2/2]

std::istream & operator>> ( std::istream &  istr_,
Njn::MatrixIO::Format  format_ 
)
inline

Definition at line 653 of file njn_matrix.hpp.

References setFormat().

◆ setFormat()

void setFormat ( Format  format_)

Referenced by operator<<(), and operator>>().

Modified on Wed Jun 19 16:59:43 2024 by modify_doxy.py rev. 669887