#include <ncbi_pch.hpp>#include <corelib/test_boost.hpp>#include <objects/seqloc/Seq_id.hpp>#include <algo/blast/api/blast_exception.hpp>#include <algo/blast/api/psiblast_iteration.hpp>#include "ensure_enough_corelib.hpp"
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Functions | |
| BOOST_AUTO_TEST_SUITE (psiblast_iteration) | |
| BOOST_AUTO_TEST_CASE (TestAsLoopCounter) | |
| BOOST_AUTO_TEST_CASE (TestConvergence) | |
| BOOST_AUTO_TEST_CASE (TestConvergence2) | |
| BOOST_AUTO_TEST_CASE (TestModifyingConvergedIterationState) | |
| void | RunNIterationsWithoutConverging (CPsiBlastIterationState &itr, TIntId n_iterations) |
| BOOST_AUTO_TEST_CASE (TestModifyingExhaustedIterationState) | |
Function Documentation
◆ BOOST_AUTO_TEST_CASE() [1/5]
| BOOST_AUTO_TEST_CASE | ( | TestAsLoopCounter | ) |
Definition at line 48 of file psiblast_iteration_unit_test.cpp.
References CPsiBlastIterationState::Advance(), CSeq_id_Handle::GetHandle(), CPsiBlastIterationState::GetIterationNumber(), GI_CONST, GI_FROM, CPsiBlastIterationState::HasConverged(), CPsiBlastIterationState::HasMoreIterations(), set< Key, Compare >::insert(), and ZERO_GI.
◆ BOOST_AUTO_TEST_CASE() [2/5]
| BOOST_AUTO_TEST_CASE | ( | TestConvergence | ) |
Definition at line 69 of file psiblast_iteration_unit_test.cpp.
References CPsiBlastIterationState::Advance(), CSeq_id_Handle::GetHandle(), CPsiBlastIterationState::GetIterationNumber(), GI_CONST, CPsiBlastIterationState::HasConverged(), CPsiBlastIterationState::HasMoreIterations(), and set< Key, Compare >::insert().
◆ BOOST_AUTO_TEST_CASE() [3/5]
| BOOST_AUTO_TEST_CASE | ( | TestConvergence2 | ) |
Definition at line 96 of file psiblast_iteration_unit_test.cpp.
References CPsiBlastIterationState::Advance(), CSeq_id_Handle::GetHandle(), CPsiBlastIterationState::GetIterationNumber(), GI_CONST, CPsiBlastIterationState::HasConverged(), CPsiBlastIterationState::HasMoreIterations(), and set< Key, Compare >::insert().
◆ BOOST_AUTO_TEST_CASE() [4/5]
| BOOST_AUTO_TEST_CASE | ( | TestModifyingConvergedIterationState | ) |
Definition at line 117 of file psiblast_iteration_unit_test.cpp.
References CPsiBlastIterationState::Advance(), CSeq_id_Handle::GetHandle(), GI_CONST, CPsiBlastIterationState::HasConverged(), and set< Key, Compare >::insert().
◆ BOOST_AUTO_TEST_CASE() [5/5]
| BOOST_AUTO_TEST_CASE | ( | TestModifyingExhaustedIterationState | ) |
Definition at line 146 of file psiblast_iteration_unit_test.cpp.
References CPsiBlastIterationState::GetIterationNumber(), CPsiBlastIterationState::HasConverged(), CPsiBlastIterationState::HasMoreIterations(), and RunNIterationsWithoutConverging().
◆ BOOST_AUTO_TEST_SUITE()
| BOOST_AUTO_TEST_SUITE | ( | psiblast_iteration | ) |
◆ RunNIterationsWithoutConverging()
| void RunNIterationsWithoutConverging | ( | CPsiBlastIterationState & | itr, |
| TIntId | n_iterations | ||
| ) |
Definition at line 134 of file psiblast_iteration_unit_test.cpp.
References CPsiBlastIterationState::Advance(), CSeq_id_Handle::GetHandle(), GI_FROM, i, and set< Key, Compare >::insert().
Referenced by BOOST_AUTO_TEST_CASE().
