seqidlist_writer.hpp File Reference

#include <corelib/ncbistre.hpp>
#include <objtools/blast/seqdb_reader/seqdb.hpp>

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Functions
int	WriteBlastSeqidlistFile (const vector< string > &idlist, CNcbiOstream &os, const string &title, const CSeqDB *seqdb=NULL)

Function Documentation

WriteBlastSeqidlistFile()

int WriteBlastSeqidlistFile	(	const vector< string > &	idlist,
		CNcbiOstream &	os,
		const string &	title,
		const CSeqDB *	seqdb = NULL
	)

Definition at line 67 of file seqidlist_writer.cpp.

References CSeqDB::AccessionsToOids(), CSeq_id::AsFastaString(), CTime::AsString(), eBDB_Version5, CTime::eCurrent, ERR_POST, CSeqDB_Path::FindBaseName(), CSeqDB::FindVolumePaths(), CSeq_id::fParse_AnyLocal, CSeq_id::fParse_PartialOK, CSeq_id::fParse_RawText, CSeqDB::GetBlastDbVersion(), CSeqDB::GetDate(), CException::GetMsg(), CSeq_id::GetSeqIdString(), CSeqDB_Substring::GetString(), CSeqDB::GetVolumeLength(), i, CSeq_id_Base::IsGi(), CSeq_id_Base::IsPir(), CSeq_id_Base::IsPrf(), ITERATE, kEmptyStr, kSeqDBEntryNotFound, NCBI_THROW, NULL, and ct::sort().

Referenced by BOOST_AUTO_TEST_CASE(), and CBlastDBAliasApp::x_ConvertSeqIDFile().