#include <ncbi_pch.hpp>#include <objtools/readers/hgvs/special_irep_to_seqfeat.hpp>#include <objtools/readers/hgvs/irep_to_seqfeat_errors.hpp>
Include dependency graph for special_irep_to_seqfeat.cpp:
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Functions | |
| CRef< CSeq_loc > | s_CreateSeqloc (const CSeq_id &seq_id) |
| CRef< CSeq_feat > | g_CreateSpecialSeqfeat (const ESpecialVariant variant, const CSeq_id &seq_id, const string hgvs_expression) |
Function Documentation
◆ g_CreateSpecialSeqfeat()
| CRef<CSeq_feat> g_CreateSpecialSeqfeat | ( | const ESpecialVariant | variant, |
| const CSeq_id & | seq_id, | ||
| const string | hgvs_expression | ||
| ) |
Definition at line 16 of file special_irep_to_seqfeat.cpp.
References CVariation_ref_Base::eMethod_E_computational, eSpecialVariant_nochange, eSpecialVariant_nochange_expected, eSpecialVariant_noseq, eSpecialVariant_noseq_expected, eSpecialVariant_splice_expected, eSpecialVariant_splice_possible, eSpecialVariant_unknown, CVariation_inst_Base::eType_del, CVariation_inst_Base::eType_identity, CRef< C, Locker >::GetNCObject(), NCBI_THROW, Ref(), and s_CreateSeqloc().
Referenced by CHgvsNaIrepReader::CreateSeqfeat(), and CHgvsProtIrepReader::CreateSeqfeat().
◆ s_CreateSeqloc()
Definition at line 8 of file special_irep_to_seqfeat.cpp.
References Ref().
Referenced by g_CreateSpecialSeqfeat().
