NCBI C++ ToolKit
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Search Toolkit Book for BlastRPSInfo
The RPS engine uses this structure to access all of the RPS blast related data (assumed to be collected in an implementation-specific manner). More...
#include <algo/blast/core/blast_rps.h>
Public Attributes | |
BlastRPSLookupFileHeader * | lookup_header |
for '.loo' file More... | |
BlastRPSProfileHeader * | profile_header |
for '.rps' file More... | |
BlastRPSAuxInfo | aux_info |
for '.aux' file More... | |
BlastRPSProfileHeader * | freq_header |
for '.wcounts' file More... | |
BlastRPSProfileHeader * | obsr_header |
for '.obsr' file More... | |
BlastRPSFreqRatiosHeader * | freq_ratios_header |
for '.freq' file More... | |
The RPS engine uses this structure to access all of the RPS blast related data (assumed to be collected in an implementation-specific manner).
Definition at line 120 of file blast_rps.h.
BlastRPSAuxInfo BlastRPSInfo::aux_info |
BlastRPSProfileHeader* BlastRPSInfo::freq_header |
for '.wcounts' file
Definition at line 125 of file blast_rps.h.
BlastRPSFreqRatiosHeader* BlastRPSInfo::freq_ratios_header |
for '.freq' file
Definition at line 127 of file blast_rps.h.
Referenced by s_RPSGapAlignDataPrepare().
BlastRPSLookupFileHeader* BlastRPSInfo::lookup_header |
for '.loo' file
Definition at line 121 of file blast_rps.h.
BlastRPSProfileHeader* BlastRPSInfo::obsr_header |
for '.obsr' file
Definition at line 126 of file blast_rps.h.
BlastRPSProfileHeader* BlastRPSInfo::profile_header |
for '.rps' file
Definition at line 122 of file blast_rps.h.
Referenced by s_RPSComputeTraceback(), and s_RPSGapAlignDataPrepare().