#include <corelib/ncbistd.hpp>
#include <objmgr/seq_entry_handle.hpp>
#include <objects/seqfeat/OrgMod.hpp>
#include <objects/seqfeat/SubSource.hpp>
#include <objects/seqtable/Seq_table.hpp>
#include <objects/seqtable/SeqTable_column.hpp>
#include <objects/seqtable/SeqTable_multi_data.hpp>
#include <objects/seqtable/SeqTable_column_info.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <gui/widgets/grid_widget/grid_widget.hpp>
#include <gui/packages/pkg_sequence_edit/srcedit_util.hpp>
#include <gui/packages/pkg_sequence_edit/seqtable_util.hpp>
#include <gui/packages/pkg_sequence_edit/featedit_util.hpp>
#include <gui/objutils/table_data.hpp>
#include <gui/packages/pkg_sequence_edit/seq_table_grid.hpp>
#include <gui/objutils/cmd_composite.hpp>

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Typedefs
typedef pair< CSourceRequirements::EWizardType, string >	TWizardName

typedef vector< TWizardName >	TWizardNameList

Functions
TWizardNameList	GetWizardNameList ()

CSourceRequirements::EWizardType	GetWizardTypeFromName (string wizard_name)

void	FixTableAfterImport (CRef< objects::CSeq_table > input_table)

string	FindBadRows (CRef< objects::CSeq_table > src, CRef< objects::CSeq_table > dst, objects::CSeq_entry_Handle seh)

CRef< objects::CSeqTable_column >	FindSeqIDColumn (const objects::CSeq_table &table)

int	FindRowForSeqId (CRef< objects::CSeqTable_column > id_col, CRef< objects::CSeq_id > id)

int	CountColumnRowConflicts (CRef< objects::CSeqTable_column > dst_id, CRef< objects::CSeqTable_column > dst_col, CRef< objects::CSeqTable_column > src_id, CRef< objects::CSeqTable_column > src_col)

int	CountTableColumnConflicts (CRef< objects::CSeq_table > dst, const objects::CSeq_table &src)

void	DeleteTableRow (CRef< objects::CSeq_table > table, int row)

int	CombineTables (CRef< objects::CSeq_table > dst, const objects::CSeq_table &src)

bool	SaveTableFile (wxWindow *parent, wxString &save_file_dir, wxString &save_file_name, CRef< objects::CSeq_table > values_table)

bool	AreAllColumnValuesTheSame (CRef< objects::CSeqTable_column > col, string default_val="")

bool	AreAnyColumnValuesMissing (CRef< objects::CSeqTable_column > col)

bool	AreAnyColumnValuesPresent (CRef< objects::CSeqTable_column > col, string default_val="")

bool	DoesColumnHaveValue (CRef< objects::CSeqTable_column > col, string val)

bool	AddSeqEntryToSeqEntry (const objects::CSeq_entry *entry, objects::CSeq_entry_Handle seh, CRef< CCmdComposite > cmd, bool &has_nuc, bool &has_prot, bool create_general_only)

string	CheckFeatureAnnotation (objects::CSeq_entry_Handle entry, bool &is_ok)

int	AddFeatureToSeqTable (const objects::CSeq_feat &f, CRef< objects::CSeq_table > table)

CRef< objects::CSeq_table >	GetFeaturesFromSeqEntry (objects::CSeq_entry_Handle entry, const objects::CSeq_feat &feat, const TFeatureSeqTableColumnList &reqs)

void	MergeStringVectors (vector< string > &problems, vector< string > add)

void	RemoveProblemsColumn (CRef< objects::CSeq_table > values_table)

void	AddProblemsColumnToFeatureSeqTable (CRef< objects::CSeq_table > table, const TFeatureSeqTableColumnList &reqs, const TFeatureSeqTableColumnList &opts)

CRef< CCmdComposite >	AddFeatureSeqTableToSeqEntry (CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry, objects::CSeqFeatData::ESubtype subtype, const TFeatureSeqTableColumnList &reqs, const TFeatureSeqTableColumnList &opts)

bool	HasLocalIntFeatureId (const objects::CSeq_feat &feat)

CRef< CCmdComposite >	RemoveMatchingFeaturesWithoutLocalIntFeatureIdsFromSeqEntry (objects::CSeq_entry_Handle entry, const objects::CSeq_feat &feat, const TFeatureSeqTableColumnList &reqs)

CRef< CFeatureSeqTableColumnBase >	GetColumnRuleForFeatureSeqTable (CRef< objects::CSeqTable_column > col, const TFeatureSeqTableColumnList &reqs, const TFeatureSeqTableColumnList &opts)

vector< string >	GetTrueFalseList ()

bool	IsSynonymForTrue (const string &val)

bool	IsSynonymForFalse (const string &val)

bool	IsTrueFalseList (const vector< string > &choices)

wxString	GetAsnSqnExtensions ()

bool	IsWizardObject (const objects::CUser_object &user)

CRef< objects::CUser_object >	MakeWizardObject ()

string	GetFieldFromWizardObject (const objects::CUser_object &user, string field_name)

void	SetWizardFieldInSeqEntryNoUndo (objects::CSeq_entry_Handle entry, string field_name, string value)

CRef< objects::CUser_object >	MakeBankItSubmissionObject ()

bool	IsBankItSubmissionObject (const objects::CUser_object &user)

string	GetDescAlternateEmailAddress (const objects::CSeqdesc &desc)

string	GetAlternateEmailAddress (objects::CSeq_entry_Handle entry)

void	SetUserAlternateEmailAddress (objects::CUser_object &u, string alt_email)

void	SetAlternateEmailAddress (objects::CSeq_entry_Handle entry, string alt_email)

bool	IsValidEmail (string email)

CRef< objects::CSeq_table >	GetIdsFromSeqEntry (const objects::CSeq_entry &entry)

void	AddIdsFromSeqEntryToTable (const objects::CSeq_entry &entry, CRef< objects::CSeq_table > table)

CRef< objects::CSeqTable_column >	GetSeqIdProblems (CRef< objects::CSeq_table > new_ids, CRef< objects::CSeq_table > old_ids, size_t max_len)

string	SummarizeIdProblems (CRef< objects::CSeqTable_column > problems)

CRef< objects::CSeqTable_column >	GetReplacementSeqIds (CRef< objects::CSeq_table > new_ids, CRef< objects::CSeq_table > old_ids, size_t max_len)

void	ApplyReplacementIds (objects::CSeq_entry &entry, CRef< objects::CSeq_table > table)

vector< string >	FindNonUniqueStrings (const vector< string > &values)

vector< string >	SortUniqueStrings (const vector< string > &values)

bool	AlreadyHasFeature (objects::CBioseq_Handle bh, string key, string comment)

bool	AlreadyHasFeature (objects::CBioseq_Handle bh, objects::CSeqFeatData::ESubtype subtype)

Variables
const string	kSubmissionPreparationToolVersion = "1.0"

const string	kWizardLabel = "NCBIWizard"

Typedef Documentation

◆ TWizardName

typedef pair<CSourceRequirements::EWizardType, string> TWizardName

Definition at line 58 of file subprep_util.hpp.

◆ TWizardNameList

typedef vector<TWizardName> TWizardNameList

Definition at line 59 of file subprep_util.hpp.

Function Documentation

◆ AddFeatureSeqTableToSeqEntry()

CRef<CCmdComposite> AddFeatureSeqTableToSeqEntry	(	CRef< objects::CSeq_table >	table,
		objects::CSeq_entry_Handle	entry,
		objects::CSeqFeatData::ESubtype	subtype,
		const TFeatureSeqTableColumnList &	reqs,
		const TFeatureSeqTableColumnList &	opts
	)

Definition at line 1278 of file subprep_util.cpp.

References AddFeatureSeqTableRowToSeqEntry(), cmd, ctll::front(), GetColumnRuleForFeatureSeqTable(), i, kSkipColumns, ncbi::grid::netcache::search::fields::size, and table.

Referenced by CFeatureTableCommandConverter::GetCommandFromValuesTable().

◆ AddFeatureToSeqTable()

int AddFeatureToSeqTable	(	const objects::CSeq_feat &	f,
		CRef< objects::CSeq_table >	table
	)

Definition at line 1089 of file subprep_util.cpp.

References AddValueToTable(), eExtreme_Biological, NStr::EqualNocase(), f(), i, ITERATE, kFeatureID, kNumSatelliteTypes, kPartialStart, kPartialStop, kSatelliteTypes, kStartColLabel, kStopColLabel, NStr::NumericToString(), row, NStr::StartsWith(), table, NStr::TruncateSpacesInPlace(), and val.

Referenced by GetFeaturesFromSeqEntry(), and CFeatureTableCommandConverter::GetValuesTableFromSeqEntry().

◆ AddIdsFromSeqEntryToTable()

void AddIdsFromSeqEntryToTable	(	const objects::CSeq_entry &	entry,
		CRef< objects::CSeq_table >	table
	)

Definition at line 1698 of file subprep_util.cpp.

References AddIdsFromSeqEntryToTable(), FindSeqTableColumnByName(), kSequenceIdColLabel, row, s_MakeIdTableIdCol(), s_MakeNpCol(), s_MakePosCol(), s_MakeTitleCol(), and table.

◆ AddProblemsColumnToFeatureSeqTable()

void AddProblemsColumnToFeatureSeqTable	(	CRef< objects::CSeq_table >	table,
		const TFeatureSeqTableColumnList &	reqs,
		const TFeatureSeqTableColumnList &	opts
	)

Definition at line 1367 of file subprep_util.cpp.

References AddProblemsToColumn(), GetColumnRuleForFeatureSeqTable(), i, ITERATE, kProblems, kSkipColumns, RemoveProblemsColumn(), ncbi::grid::netcache::search::fields::size, and table.

Referenced by CFeatureTableCommandConverter::GetValuesTableFromSeqEntry().

◆ AddSeqEntryToSeqEntry()

bool AddSeqEntryToSeqEntry	(	const objects::CSeq_entry *	entry,
		objects::CSeq_entry_Handle	seh,
		CRef< CCmdComposite >	cmd,
		bool &	has_nuc,
		bool &	has_prot,
		bool	create_general_only
	)

Definition at line 893 of file subprep_util.cpp.

References AddProteinToSeqEntry(), cmd, ITERATE, ParseTitlesToNewSeqEntries(), and s_ReportMixError().

Referenced by CAddSequences::apply(), CSubPrep_panel::OnAddSequenceBtnClick(), and CPromote::x_PromoteCdregion().

◆ AlreadyHasFeature() [1/2]

bool AlreadyHasFeature	(	objects::CBioseq_Handle	bh,
		objects::CSeqFeatData::ESubtype	subtype
	)

Definition at line 2051 of file subprep_util.cpp.

References f().

◆ AlreadyHasFeature() [2/2]

bool AlreadyHasFeature	(	objects::CBioseq_Handle	bh,
		string	key,
		string	comment
	)

Definition at line 2033 of file subprep_util.cpp.

References NStr::Equal(), NStr::EqualNocase(), f(), NStr::IsBlank(), and ncbi::grid::netcache::search::fields::key.

Referenced by CBulkOtherAddPanel::AddOneCommand(), CBulkRNAAddPanel::AddOneCommand(), CBulkCDSAddPanel::AddOneCommand(), CIGSPanel::GetCommand(), CRNANamePanel::GetCommand(), CVirusNonCodingFeaturesPanel::GetCommand(), and CBulkFeatureAddDlgStd::x_CreateImportFeatures().

◆ ApplyReplacementIds()

void ApplyReplacementIds	(	objects::CSeq_entry &	entry,
		CRef< objects::CSeq_table >	table
	)

Definition at line 1999 of file subprep_util.cpp.

References FindSeqTableColumnByName(), kNewId, kSequenceIdColLabel, NON_CONST_ITERATE, table, and TransformSeqAnnots().

Referenced by CAddSequences::apply(), and CSubPrep_panel::OnAddSequenceBtnClick().

◆ AreAllColumnValuesTheSame()

bool AreAllColumnValuesTheSame	(	CRef< objects::CSeqTable_column >	col,
		string	default_val = `""`
	)

Definition at line 596 of file subprep_util.cpp.

References NStr::Equal(), NStr::IsBlank(), row, and val.

Referenced by CCommentDescriptorTableCommandConverter::CheckForMixedValues(), CChimeraCommentDescriptorTableCommandConverter::CheckForMixedValues(), CTableCommandConverter::CheckForMixedValues(), CGenomeTableCommandConverter::CheckForMixedValues(), CPrimerTableCommandConverter::CheckForMixedValues(), CSubPrep_panel::OkToBulkEditSeqTech(), CSubPrep_panel::SetWizardType(), CSubmissionPrepMainPanel::UpdateSeqTechCtrls(), and CSubPrepFieldEditor::UpdateValues().

◆ AreAnyColumnValuesMissing()

bool AreAnyColumnValuesMissing ( CRef< objects::CSeqTable_column > col )

Definition at line 634 of file subprep_util.cpp.

References NStr::IsBlank(), and row.

Referenced by CChimeraCommentDescriptorTableCommandConverter::CheckForMixedValues(), CSubPrep_panel::SetWizardType(), CSubmissionPrepMainPanel::UpdateSeqTechCtrls(), and CSubPrepFieldEditor::UpdateValues().

◆ AreAnyColumnValuesPresent()

bool AreAnyColumnValuesPresent	(	CRef< objects::CSeqTable_column >	col,
		string	default_val = `""`
	)

Definition at line 678 of file subprep_util.cpp.

References NStr::EqualNocase(), NStr::IsBlank(), and row.

Referenced by CSubPrep_panel::x_ClearWizardSpecificData(), and CSubPrepFieldEditor::x_SetOneValue().

◆ CheckFeatureAnnotation()

string CheckFeatureAnnotation	(	objects::CSeq_entry_Handle	entry,
		bool &	is_ok
	)

Definition at line 968 of file subprep_util.cpp.

References all, and NStr::NumericToString().

Referenced by CSubPrep_panel::x_UpdateFeatureStatus().

◆ CombineTables()

int CombineTables	(	CRef< objects::CSeq_table >	dst,
		const objects::CSeq_table &	src
	)

Definition at line 505 of file subprep_util.cpp.

References CombineColumns(), FindSeqIDColumn(), FindSeqTableColumnByName(), and ITERATE.

Referenced by CTblEditDlg::OnImportTableClick().

◆ CountColumnRowConflicts()

int CountColumnRowConflicts	(	CRef< objects::CSeqTable_column >	dst_id,
		CRef< objects::CSeqTable_column >	dst_col,
		CRef< objects::CSeqTable_column >	src_id,
		CRef< objects::CSeqTable_column >	src_col
	)

Definition at line 393 of file subprep_util.cpp.

References NStr::Equal(), FindRowForSeqId(), i, NStr::IsBlank(), and row.

Referenced by CountTableColumnConflicts().

◆ CountTableColumnConflicts()

int CountTableColumnConflicts	(	CRef< objects::CSeq_table >	dst,
		const objects::CSeq_table &	src
	)

Definition at line 411 of file subprep_util.cpp.

References CountColumnRowConflicts(), FindSeqIDColumn(), FindSeqTableColumnByName(), and ITERATE.

Referenced by CTblEditDlg::OnImportTableClick().

◆ DeleteTableRow()

void DeleteTableRow	(	CRef< objects::CSeq_table >	table,
		int	row
	)

Definition at line 432 of file subprep_util.cpp.

References NON_CONST_ITERATE, row, and table.

Referenced by FixTableAfterImport().

◆ DoesColumnHaveValue()

bool DoesColumnHaveValue	(	CRef< objects::CSeqTable_column >	col,
		string	val
	)

Definition at line 656 of file subprep_util.cpp.

References NStr::Equal(), row, and val.

Referenced by CSubmissionPrepMainPanel::CreateVirusMoleculeOptions().

◆ FindBadRows()

string FindBadRows	(	CRef< objects::CSeq_table >	src,
		CRef< objects::CSeq_table >	dst,
		objects::CSeq_entry_Handle	seh
	)

Definition at line 327 of file subprep_util.cpp.

References eContent, FindSeqIDColumn(), NStr::IsBlank(), ITERATE, NStr::NumericToString(), OneRowOk(), and row.

Referenced by CTblEditDlg::OnImportTableClick().

◆ FindNonUniqueStrings()

vector<string> FindNonUniqueStrings ( const vector< string > & values )

Definition at line 1036 of file featedit_util.cpp.

References NStr::Equal().

Referenced by GetReplacementSeqIds(), GetSeqIdProblems(), CSatelliteTypeNameColumn::IsValid(), and CSubPrep_panel::x_NeedUniqueMicrosatelliteNames().

◆ FindRowForSeqId()

int FindRowForSeqId	(	CRef< objects::CSeqTable_column >	id_col,
		CRef< objects::CSeq_id >	id
	)

Definition at line 377 of file subprep_util.cpp.

References row.

Referenced by CombineColumns(), and CountColumnRowConflicts().

◆ FindSeqIDColumn()

CRef<objects::CSeqTable_column> FindSeqIDColumn ( const objects::CSeq_table & table )

Definition at line 365 of file subprep_util.cpp.

References ITERATE, NULL, and table.

Referenced by CombineTables(), CountTableColumnConflicts(), FindBadRows(), and FixTableAfterImport().

◆ FixTableAfterImport()

void FixTableAfterImport ( CRef< objects::CSeq_table > input_table )

Definition at line 219 of file subprep_util.cpp.

References DeleteTableRow(), eContent, NStr::Equal(), NStr::EqualNocase(), FindSeqIDColumn(), NStr::IsBlank(), ITERATE, NON_CONST_ITERATE, NStr::NumericToString(), NStr::ReplaceInPlace(), ncbi::grid::netcache::search::fields::size, and val.

Referenced by CTblEditDlg::OnImportTableClick().

◆ GetAlternateEmailAddress()

string GetAlternateEmailAddress ( objects::CSeq_entry_Handle entry )

Definition at line 1549 of file subprep_util.cpp.

References GetDescAlternateEmailAddress(), and NStr::IsBlank().

Referenced by CSubPrep_panel::GetAltEmailAddress().

◆ GetAsnSqnExtensions()

wxString GetAsnSqnExtensions ( )

Definition at line 1419 of file subprep_util.cpp.

References wxT.

Referenced by CSubmitBlockDlg::OnExportBtnClick(), and CSubPrep_panel::OnSaveBtnClick().

◆ GetColumnRuleForFeatureSeqTable()

CRef<CFeatureSeqTableColumnBase> GetColumnRuleForFeatureSeqTable	(	CRef< objects::CSeqTable_column >	col,
		const TFeatureSeqTableColumnList &	reqs,
		const TFeatureSeqTableColumnList &	opts
	)

Definition at line 1350 of file subprep_util.cpp.

References CFeatureSeqTableColumnBaseFactory::Create(), ITERATE, and MatchColumnName().

Referenced by AddFeatureSeqTableToSeqEntry(), AddProblemsColumnToFeatureSeqTable(), and CFeatureTableCommandConverter::MakeProblemsColumn().

◆ GetDescAlternateEmailAddress()

string GetDescAlternateEmailAddress ( const objects::CSeqdesc & desc )

Definition at line 1535 of file subprep_util.cpp.

References NStr::Find(), GetFieldFromWizardObject(), IsBankItSubmissionObject(), kBankItAltEmailPrefix, kSMARTComment, and str().

Referenced by GetAlternateEmailAddress(), and CSubmitBlockDlg::OnImportBtnClick().

◆ GetFeaturesFromSeqEntry()

CRef<objects::CSeq_table> GetFeaturesFromSeqEntry	(	objects::CSeq_entry_Handle	entry,
		const objects::CSeq_feat &	feat,
		const TFeatureSeqTableColumnList &	reqs
	)

Definition at line 1159 of file subprep_util.cpp.

References AddFeatureToSeqTable(), AddIntColumnToTable(), AddStringColumnToTable(), fi, kFeatureID, kSequenceIdColLabel, kStartColLabel, kStopColLabel, s_OkToAddFeature(), and table.

Referenced by CFeatureTableCommandConverter::GetValuesTableFromSeqEntry().

◆ GetFieldFromWizardObject()

string GetFieldFromWizardObject	(	const objects::CUser_object &	user,
		string	field_name
	)

Definition at line 1516 of file subprep_util.cpp.

References NStr::EqualNocase(), ITERATE, and rapidjson::value.

Referenced by GetDescAlternateEmailAddress(), CSubPrep_panel::GetWizardFieldFromSeqEntry(), CSubPrep_panel::GetWizardSrcTypeField(), CSubPrep_panel::GetWizardTypeField(), CSubPrep_panel::GetWizardTypefromSeqEntry(), and CSubPrep_panel::x_GetWizardSrcTypefromSeqEntry().

◆ GetIdsFromSeqEntry()

CRef<objects::CSeq_table> GetIdsFromSeqEntry ( const objects::CSeq_entry & entry )

Definition at line 1731 of file subprep_util.cpp.

References AddIdsFromSeqEntryToTable(), row, s_MakeIdTableIdCol(), s_MakeNpCol(), s_MakePosCol(), s_MakeTitleCol(), and table.

Referenced by CAddSequences::apply(), CSeqIdFixDlg::CreateControls(), and CSubPrep_panel::OnAddSequenceBtnClick().

◆ GetReplacementSeqIds()

CRef<objects::CSeqTable_column> GetReplacementSeqIds	(	CRef< objects::CSeq_table >	new_ids,
		CRef< objects::CSeq_table >	old_ids,
		size_t	max_len
	)

Definition at line 1873 of file subprep_util.cpp.

References eContent, NStr::EqualNocase(), FindNonUniqueStrings(), FindSeqTableColumnByName(), i, ITERATE, kSequenceIdColLabel, log, NULL, NStr::NumericToString(), offset, CRef< C, Locker >::Reset(), NStr::StartsWith(), str(), and NStr::StringToInt().

◆ GetSeqIdProblems()

CRef<objects::CSeqTable_column> GetSeqIdProblems	(	CRef< objects::CSeq_table >	new_ids,
		CRef< objects::CSeq_table >	old_ids,
		size_t	max_len
	)

Definition at line 1769 of file subprep_util.cpp.

References eContent, NStr::EqualNocase(), FindNonUniqueStrings(), FindSeqTableColumnByName(), GetIdValueFromColumn(), i, NStr::IsBlank(), ITERATE, kIdDuplicate, kIdMissing, kIdTooLong, kNewId, kSequenceIdColLabel, NULL, CRef< C, Locker >::Reset(), str(), and val.

Referenced by CAddSequences::apply(), CSeqIdFixDlg::CreateControls(), CSeqIdFixDlg::GetReplacementTable(), CSubPrep_panel::OnAddSequenceBtnClick(), and CSeqIdFixDlg::x_RefreshProblems().

◆ GetTrueFalseList()

vector<string> GetTrueFalseList ( )

Definition at line 1041 of file subprep_util.cpp.

Referenced by CFeatureTableCommandConverter::GetChoices().

◆ GetWizardNameList()

TWizardNameList GetWizardNameList ( )

Definition at line 121 of file subprep_util.cpp.

References i, k_NumWizardNames, and s_WizardNames.

Referenced by CSubPrepIntroPanel::CreateControls(), and CSubPrep_panel::Init().

◆ GetWizardTypeFromName()

CSourceRequirements::EWizardType GetWizardTypeFromName ( string wizard_name )

Definition at line 132 of file subprep_util.cpp.

References NStr::EqualNocase(), CSourceRequirements::eWizardType_standard, k_NumWizardNames, and s_WizardNames.

Referenced by CSubPrep_panel::GetWizardTypefromSeqEntry(), and CSubPrepIntroPanel::SetWizardTypeCtrl().

◆ HasLocalIntFeatureId()

bool HasLocalIntFeatureId ( const objects::CSeq_feat & feat )

Definition at line 1393 of file subprep_util.cpp.

Referenced by RemoveMatchingFeaturesWithoutLocalIntFeatureIdsFromSeqEntry().

◆ IsBankItSubmissionObject()

bool IsBankItSubmissionObject ( const objects::CUser_object & user )

Definition at line 1498 of file subprep_util.cpp.

References NStr::EqualNocase(), and kBankitSubmissionLabel.

Referenced by GetDescAlternateEmailAddress(), CSubmitBlockDlg::OnImportBtnClick(), and SetAlternateEmailAddress().

◆ IsSynonymForFalse()

bool IsSynonymForFalse ( const string & val )

Definition at line 1061 of file subprep_util.cpp.

References NStr::EqualNocase(), NStr::IsBlank(), and val.

Referenced by IsTrueFalseList(), CSeqTableGridPanel::SetColumnSizesAndChoices(), and CSeqTableGridPanel::UpdateColumnChoices().

◆ IsSynonymForTrue()

bool IsSynonymForTrue ( const string & val )

Definition at line 1049 of file subprep_util.cpp.

References NStr::EqualNocase(), and val.

Referenced by IsTrueFalseList(), CSeqTableGridPanel::SetColumnSizesAndChoices(), and CSeqTableGridPanel::UpdateColumnChoices().

◆ IsTrueFalseList()

bool IsTrueFalseList ( const vector< string > & choices )

Definition at line 1074 of file subprep_util.cpp.

References IsSynonymForFalse(), and IsSynonymForTrue().

◆ IsValidEmail()

bool IsValidEmail ( string email )

Definition at line 1602 of file subprep_util.cpp.

References NStr::Find(), NStr::IsBlank(), and tmp.

Referenced by CSubmitBlockDlg::GetBlockProblems(), CSubPrepIntroPanel::RefreshSubmitterInfoStatus(), and CSubPrepIntroPanel::x_LaunchSubmitEditor().

◆ IsWizardObject()

bool IsWizardObject ( const objects::CUser_object & user )

Definition at line 1443 of file subprep_util.cpp.

References NStr::EqualNocase(), and kWizardLabel.

Referenced by CSubPrep_panel::GetWizardFieldFromSeqEntry(), CSubPrep_panel::GetWizardSrcTypeField(), CSubPrep_panel::GetWizardTypeField(), CSubPrep_panel::GetWizardTypefromSeqEntry(), CSubPrep_panel::SetWizardFieldInSeqEntry(), SetWizardFieldInSeqEntryNoUndo(), and CSubPrep_panel::x_GetWizardSrcTypefromSeqEntry().

◆ MakeBankItSubmissionObject()

CRef<objects::CUser_object> MakeBankItSubmissionObject ( )

Definition at line 1508 of file subprep_util.cpp.

References kBankitSubmissionLabel.

Referenced by CSubmitBlockDlg::OnExportBtnClick(), and SetAlternateEmailAddress().

◆ MakeWizardObject()

CRef<objects::CUser_object> MakeWizardObject ( )

Definition at line 1453 of file subprep_util.cpp.

References kWizardLabel.

Referenced by CSubPrep_panel::SetWizardFieldInSeqEntry(), and SetWizardFieldInSeqEntryNoUndo().

◆ MergeStringVectors()

void MergeStringVectors	(	vector< string > &	problems,
		vector< string >	add
	)

Definition at line 1297 of file subprep_util.cpp.

References NStr::IsBlank().

Referenced by AddProblemsToColumn().

◆ RemoveMatchingFeaturesWithoutLocalIntFeatureIdsFromSeqEntry()

CRef<CCmdComposite> RemoveMatchingFeaturesWithoutLocalIntFeatureIdsFromSeqEntry	(	objects::CSeq_entry_Handle	entry,
		const objects::CSeq_feat &	feat,
		const TFeatureSeqTableColumnList &	reqs
	)