NCBI C++ ToolKit
Typedefs | Functions | Variables
update_viewer.cpp File Reference
#include <ncbi_pch.hpp>
#include <corelib/ncbistd.hpp>
#include <corelib/ncbistl.hpp>
#include <objtools/readers/fasta.hpp>
#include <util/line_reader.hpp>
#include <objects/cdd/Cdd.hpp>
#include <objects/cdd/Update_align.hpp>
#include <objects/cdd/Update_comment.hpp>
#include <objects/seq/Seq_annot.hpp>
#include <objects/seq/Bioseq.hpp>
#include <objects/seqloc/PDB_seq_id.hpp>
#include <objects/seqset/Seq_entry.hpp>
#include <objects/seqset/Bioseq_set.hpp>
#include <objects/ncbimime/Ncbi_mime_asn1.hpp>
#include <objects/ncbimime/Biostruc_seq.hpp>
#include <objects/mmdb2/Model_type.hpp>
#include <objects/mmdb2/Biostruc_model.hpp>
#include <objects/mmdb1/Biostruc_graph.hpp>
#include <objects/mmdb1/Biostruc_descr.hpp>
#include <objects/general/Dbtag.hpp>
#include <objects/general/Object_id.hpp>
#include <objects/mmdb1/Biostruc_id.hpp>
#include <objects/mmdb1/Mmdb_id.hpp>
#include <objects/mmdb1/Biostruc_annot_set.hpp>
#include <objects/mmdb3/Biostruc_feature_set.hpp>
#include <objects/mmdb3/Chem_graph_alignment.hpp>
#include <objects/mmdb3/Chem_graph_pntrs.hpp>
#include <objects/mmdb3/Residue_pntrs.hpp>
#include <objects/mmdb3/Residue_interval_pntr.hpp>
#include <objects/mmdb1/Molecule_id.hpp>
#include <objects/mmdb1/Residue_id.hpp>
#include <objects/mmdb3/Biostruc_feature_set_id.hpp>
#include <objects/mmdb3/Biostruc_feature_id.hpp>
#include <memory>
#include <algorithm>
#include "remove_header_conflicts.hpp"
#include "update_viewer.hpp"
#include "asn_reader.hpp"
#include "update_viewer_window.hpp"
#include "messenger.hpp"
#include "sequence_display.hpp"
#include "cn3d_colors.hpp"
#include "alignment_manager.hpp"
#include "cn3d_threader.hpp"
#include "structure_set.hpp"
#include "molecule.hpp"
#include "cn3d_tools.hpp"
#include "cn3d_blast.hpp"
#include "molecule_identifier.hpp"
#include "cn3d_cache.hpp"
#include "cn3d_ba_interface.hpp"
#include "cn3d_pssm.hpp"
#include <wx/tokenzr.h>
+ Include dependency graph for update_viewer.cpp:

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Typedefs

typedef bool(* CompareUpdates) (BlockMultipleAlignment *a, BlockMultipleAlignment *b)
 

Functions

 USING_SCOPE (objects)
 
static BlockMultipleAlignmentMakeEmptyAlignment (const Sequence *master, const Sequence *dependent)
 
static void MapDependentToMaster (const BlockMultipleAlignment *alignment, int dependentRow, vector< int > *dependent2master)
 
static BlockMultipleAlignmentGetAlignmentByBestNeighbor (const BlockMultipleAlignment *multiple, const BLASTer::AlignmentList rowAlignments)
 
static bool CompareUpdatesByIdentifier (BlockMultipleAlignment *a, BlockMultipleAlignment *b)
 
static bool CompareUpdatesByScore (BlockMultipleAlignment *a, BlockMultipleAlignment *b)
 

Variables

 USING_NCBI_SCOPE
 
static CompareUpdates updateComparisonFunction = NULL
 

Typedef Documentation

◆ CompareUpdates

typedef bool(* CompareUpdates) (BlockMultipleAlignment *a, BlockMultipleAlignment *b)

Definition at line 1166 of file update_viewer.cpp.

Function Documentation

◆ CompareUpdatesByIdentifier()

static bool CompareUpdatesByIdentifier ( BlockMultipleAlignment a,
BlockMultipleAlignment b 
)
static

Definition at line 1168 of file update_viewer.cpp.

References a, b, and MoleculeIdentifier::CompareIdentifiers().

Referenced by UpdateViewer::SortByIdentifier().

◆ CompareUpdatesByScore()

static bool CompareUpdatesByScore ( BlockMultipleAlignment a,
BlockMultipleAlignment b 
)
static

Definition at line 1176 of file update_viewer.cpp.

References a, and b.

Referenced by UpdateViewer::SortByPSSM().

◆ GetAlignmentByBestNeighbor()

static BlockMultipleAlignment* GetAlignmentByBestNeighbor ( const BlockMultipleAlignment multiple,
const BLASTer::AlignmentList  rowAlignments 
)
static

◆ MakeEmptyAlignment()

static BlockMultipleAlignment* MakeEmptyAlignment ( const Sequence master,
const Sequence dependent 
)
static

◆ MapDependentToMaster()

static void MapDependentToMaster ( const BlockMultipleAlignment alignment,
int  dependentRow,
vector< int > *  dependent2master 
)
static

◆ USING_SCOPE()

USING_SCOPE ( objects  )

Variable Documentation

◆ updateComparisonFunction

CompareUpdates updateComparisonFunction = NULL
static

◆ USING_NCBI_SCOPE

USING_NCBI_SCOPE

Definition at line 93 of file update_viewer.cpp.

Modified on Wed Jun 19 17:01:04 2024 by modify_doxy.py rev. 669887