Implementation for the CWriteDB_LMDB and related classes. More...
#include <ncbi_pch.hpp>#include <corelib/ncbistd.hpp>#include <corelib/ncbifile.hpp>#include <objtools/blast/seqdb_reader/impl/seqdb_lmdb.hpp>#include <objtools/blast/seqdb_writer/writedb_lmdb.hpp>#include <objects/seqloc/PDB_seq_id.hpp>#include <math.h>
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Macros | |
| #define | DEFAULT_MAX_ENTRY_PER_TXN 40000 |
| #define | DEFAULT_MIN_SPLIT_SORT_SIZE 500000000 |
| #define | DEFAULT_MIN_SPLIT_CHUNK_SIZE 25000000 |
Functions | |
| Uint4 | s_WirteIds (CNcbiOfstream &os, vector< string > &ids) |
| Uint4 | s_WirteTaxIds (CNcbiOfstream &os, vector< TTaxId > &tax_ids) |
| Uint4 | s_WirteOids (CNcbiOfstream &os, vector< blastdb::TOid > &oids) |
Detailed Description
Implementation for the CWriteDB_LMDB and related classes.
Definition in file writedb_lmdb.cpp.
Macro Definition Documentation
◆ DEFAULT_MAX_ENTRY_PER_TXN
| #define DEFAULT_MAX_ENTRY_PER_TXN 40000 |
Definition at line 46 of file writedb_lmdb.cpp.
◆ DEFAULT_MIN_SPLIT_CHUNK_SIZE
| #define DEFAULT_MIN_SPLIT_CHUNK_SIZE 25000000 |
Definition at line 48 of file writedb_lmdb.cpp.
◆ DEFAULT_MIN_SPLIT_SORT_SIZE
| #define DEFAULT_MIN_SPLIT_SORT_SIZE 500000000 |
Definition at line 47 of file writedb_lmdb.cpp.
Function Documentation
◆ s_WirteIds()
| Uint4 s_WirteIds | ( | CNcbiOfstream & | os, |
| vector< string > & | ids | ||
| ) |
Definition at line 344 of file writedb_lmdb.cpp.
References l(), and ct::sort().
Referenced by CWriteDB_LMDB::x_CreateOidToSeqidsLookupFile().
◆ s_WirteOids()
| Uint4 s_WirteOids | ( | CNcbiOfstream & | os, |
| vector< blastdb::TOid > & | oids | ||
| ) |
Definition at line 578 of file writedb_lmdb.cpp.
Referenced by CWriteDB_TaxID::x_CreateTaxIdToOidsLookupFile().
◆ s_WirteTaxIds()
| Uint4 s_WirteTaxIds | ( | CNcbiOfstream & | os, |
| vector< TTaxId > & | tax_ids | ||
| ) |
Definition at line 523 of file writedb_lmdb.cpp.
References TAX_ID_TO.
Referenced by CWriteDB_TaxID::x_CreateOidToTaxIdsLookupFile().
