Turkey_2.01

This assembly has been replaced. See current version

Organism name:: Meleagris gallopavo (turkey)
Infraspecific name:: Breed: Aviagen turkey brand Nicholas breeding stock
Isolate:: NT-WF06-2002-E0010
Sex:: female
BioSample:: SAMN02981253
BioProject:: PRJNA42129
Submitter:: Turkey Genome Consortium
Date:: 2010/09/08
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000146605.1 (replaced)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: ADDD01
Assembly method:: Celera v. 5.3 (modified)
Genome coverage:: 17x
Sequencing technology:: 454-Titanium; Illumina GAII

IDs: 169768 [UID] 169768 [GenBank]

See Genome Information for Meleagris gallopavo

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000146605.4	=	GCF_000146605.3	Turkey_5.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_000146605.3	=	GCF_000146605.2	Turkey_5.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000146605.2	=	GCF_000146605.1	Turkey_2.01	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000146605.1	n/a	n/a	Turkey_2.01	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	1,061,800,384
Total ungapped length	935,905,669
Gaps between scaffolds	18,593
Number of scaffolds	24,483
Scaffold N50	857,645
Scaffold L50	351
Number of contigs	152,638
Contig N50	12,520
Contig L50	22,325
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	152,638

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000962.1	=	NC_015011.1	0
Chromosome 2	CM000963.1	=	NC_015012.1	0
Chromosome 3	CM000964.1	=	NC_015013.1	0
Chromosome 4	CM000965.1	=	NC_015014.1	0
Chromosome 5	CM000966.1	=	NC_015015.1	0
Chromosome 6	CM000967.1	=	NC_015016.1	0
Chromosome 7	CM000968.1	=	NC_015017.1	0
Chromosome 8	CM000969.1	=	NC_015018.1	0
Chromosome 9	CM000970.1	=	NC_015019.1	0
Chromosome 10	CM000971.1	=	NC_015020.1	0
Chromosome 11	CM000972.1	=	NC_015021.1	0
Chromosome 12	CM000973.1	=	NC_015022.1	0
Chromosome 13	CM000974.1	=	NC_015023.1	0
Chromosome 14	CM000975.1	=	NC_015024.1	0
Chromosome 15	CM000976.1	=	NC_015025.1	0
Chromosome 16	CM000977.1	=	NC_015026.1	0
Chromosome 17	CM000978.1	=	NC_015027.1	0
Chromosome 18	CM000979.1	=	NC_015028.1	0
Chromosome 19	CM000980.1	=	NC_015029.1	0
Chromosome 20	CM000981.1	=	NC_015030.1	0
Chromosome 21	CM000982.1	=	NC_015031.1	0
Chromosome 22	CM000983.1	=	NC_015032.1	0
Chromosome 23	CM000984.1	=	NC_015033.1	0
Chromosome 24	CM000985.1	=	NC_015034.1	0
Chromosome 25	CM000986.1	=	NC_015035.1	0
Chromosome 26	CM000987.1	=	NC_015036.1	0
Chromosome 27	CM000988.1	=	NC_015037.1	0
Chromosome 28	CM000989.1	=	NC_015038.1	0
Chromosome 29	CM000990.1	=	NC_015039.1	0
Chromosome 30	CM000991.1	=	NC_015040.1	0
Chromosome Z	CM000993.1	=	NC_015041.1	0
Chromosome W	CM000992.1	=	NC_015042.1	0
unplaced	n/a	n/a	n/a	5,858

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,061,800,384	24,483	935,905,669	857,645	128,155	18,593
Chromosome 1	204,065,131	1,306	181,824,072	813,936	25,250	1,305
Chromosome 2	116,965,580	507	106,715,261	984,690	13,876	506
Chromosome 3	100,405,168	462	91,132,362	1,189,768	12,187	461
Chromosome 4	74,864,452	420	68,843,681	926,343	8,749	419
Chromosome 5	62,524,071	251	56,965,061	963,258	7,302	250
Chromosome 6	53,257,280	279	48,704,866	866,169	6,255	278
Chromosome 7	38,723,565	183	35,338,011	937,167	4,572	182
Chromosome 8	38,656,188	166	35,279,558	898,670	4,585	165
Chromosome 9	19,388,849	67	18,014,548	1,084,665	2,219	66
Chromosome 10	31,125,776	128	28,668,755	971,158	3,605	127
Chromosome 11	24,221,871	75	22,659,815	1,411,844	2,645	74
Chromosome 12	20,663,262	70	18,944,789	1,544,583	2,302	69
Chromosome 13	20,109,194	61	18,696,917	1,015,121	2,293	60
Chromosome 14	20,812,856	104	19,181,693	837,383	2,263	103
Chromosome 15	18,242,780	57	16,791,032	1,400,939	2,208	56
Chromosome 16	15,988,495	87	14,411,712	832,115	1,880	86
Chromosome 17	13,277,600	86	12,015,409	649,186	1,549	85
Chromosome 18	244,177	9	139,800	32,892	42	8
Chromosome 19	10,526,435	52	9,478,168	793,882	1,347	51
Chromosome 20	11,078,015	51	9,943,043	703,386	1,373	50
Chromosome 21	10,459,824	42	9,405,680	1,159,336	1,286	41
Chromosome 22	14,786,829	67	13,252,737	895,402	1,798	66
Chromosome 23	7,113,888	34	6,420,011	795,680	903	33
Chromosome 24	4,158,796	17	3,613,305	2,198,672	552	16
Chromosome 25	5,560,109	33	4,962,971	628,136	801	32
Chromosome 26	6,750,878	28	5,925,373	1,012,396	1,012	27
Chromosome 27	943,817	9	687,723	321,732	152	8
Chromosome 28	4,894,109	27	4,244,182	910,623	690	26
Chromosome 29	4,826,704	90	3,649,246	333,024	713	89
Chromosome 30	4,396,694	41	3,524,539	400,864	652	40
Chromosome Z	81,011,772	13,782	47,735,403	11,146	11,188	13,781
Chromosome W	242,905	34	108,224	11,169	16	33
unplaced	21,513,314	5,858	18,627,722	7,619	1,890	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Turkey_2.01

See Genome Information for Meleagris gallopavo

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics