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Turkey_5.1

Organism name:
Meleagris gallopavo (turkey)
Infraspecific name:
Breed: Aviagen turkey brand Nicholas breeding stock
Isolate:
NT-WF06-2002-E0010
Sex:
female
BioSample:
SAMN02981253
BioProject:
PRJNA42129
Submitter:
Turkey Genome Consortium
Date:
2019/10/21
Synonyms:
melGal5
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000146605.4 (latest)
RefSeq assembly accession:
GCF_000146605.3 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADDD02
Assembly method:
MaSuRCA v. 1.9.2
Expected final version:
yes
Genome coverage:
35.0x
Sequencing technology:
Illumina GAII; Sanger; 454

IDs: 5091991 [UID] 14905098 [GenBank] 15099478 [RefSeq]

See Genome Information for Meleagris gallopavo

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

In November 2019 46,111 contigs were suppressed because they were contaminants, and the assembly was updated to Turkey_5.1 (GCA_000146605.4).

Global statistics

Total sequence length1,115,474,681
Total ungapped length1,080,180,254
Gaps between scaffolds2,520
Number of scaffolds187,695
Scaffold N503,898,092
Scaffold L5080
Number of contigs250,220
Contig N5027,076
Contig L5011,318
Total number of chromosomes and plasmids33
Number of component sequences (WGS or clone)250,220

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000146615.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000962.2=NC_015011.21,990
Chromosome 2CM000963.2=NC_015012.2967
Chromosome 3CM000964.2=NC_015013.2601
Chromosome 4CM000965.2=NC_015014.2251
Chromosome 5CM000966.2=NC_015015.2709
Chromosome 6CM000967.2=NC_015016.2764
Chromosome 7CM000968.2=NC_015017.2616
Chromosome 8CM000969.2=NC_015018.2619
Chromosome 9CM000970.2=NC_015019.2130
Chromosome 10CM000971.2=NC_015020.2109
Chromosome 11CM000972.2=NC_015021.268
Chromosome 12CM000973.2=NC_015022.2144
Chromosome 13CM000974.2=NC_015023.288
Chromosome 14CM000975.2=NC_015024.2208
Chromosome 15CM000976.2=NC_015025.2110
Chromosome 16CM000977.2=NC_015026.2278
Chromosome 17CM000978.2=NC_015027.2320
Chromosome 18CM000979.2=NC_015028.232
Chromosome 19CM000980.2=NC_015029.2159
Chromosome 20CM000981.2=NC_015030.2146
Chromosome 21CM000982.2=NC_015031.2290
Chromosome 22CM000983.2=NC_015032.2328
Chromosome 23CM000984.2=NC_015033.229
Chromosome 24CM000985.2=NC_015034.266
Chromosome 25CM000986.2=NC_015035.272
Chromosome 26CM000987.2=NC_015036.2162
Chromosome 27CM000988.2=NC_015037.229
Chromosome 28CM000989.2=NC_015038.245
Chromosome 29CM000990.2=NC_015039.2100
Chromosome 30CM000991.2=NC_015040.282
Chromosome ZCM000993.2=NC_015041.2473
Chromosome WCM000992.2=NC_015042.214
unplacedn/an/an/a175,143

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,115,457,962187,6941,080,163,5353,898,09262,5252,520
Chromosome 1AllAssembled moleculeUnlocalized scaffolds192,230,212190,651,7021,578,5102,3083181,990189,360,695187,891,1581,469,5373,494,0053,707,30782610,74010,690503173170
Chromosome 2AllAssembled moleculeUnlocalized scaffolds110,666,454109,662,2341,004,2201,06295967109,102,640108,266,094836,5465,201,7095,201,7092,1525,8565,8134394940
Chromosome 3AllAssembled moleculeUnlocalized scaffolds93,871,47993,210,757660,72270210160192,585,57191,982,123603,4484,108,9924,108,9922,1774,9654,943221001000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds71,114,89370,658,698456,1953196825170,093,64369,690,093403,5507,043,1437,043,1435,7683,6593,6392067670
Chromosome 5AllAssembled moleculeUnlocalized scaffolds59,605,71459,006,440599,2747958670958,714,60058,160,020554,5804,078,7104,385,8421,0613,2033,1891485850
Chromosome 6AllAssembled moleculeUnlocalized scaffolds51,280,82250,680,202600,6208357176450,596,08250,030,753565,3296,166,5416,166,5417632,6752,6581770700
Chromosome 7AllAssembled moleculeUnlocalized scaffolds36,751,89036,287,238464,6526432761636,313,45635,871,832441,6246,685,1066,685,1067921,8671,8571026260
Chromosome 8AllAssembled moleculeUnlocalized scaffolds35,171,81234,701,080470,7326604161934,534,70634,125,495409,2115,913,5365,913,5367221,9161,8952140400
Chromosome 9AllAssembled moleculeUnlocalized scaffolds19,219,47519,076,383143,0921471713018,954,80618,811,914142,89213,126,88013,126,8802,047935931416160
Chromosome 10AllAssembled moleculeUnlocalized scaffolds29,323,06229,209,805113,2571281910929,075,67328,962,458113,21511,787,08411,787,0842,0151,5151,512318180
Chromosome 11AllAssembled moleculeUnlocalized scaffolds23,827,11723,716,164110,95386186823,492,50923,389,472103,0376,538,6196,538,6193,7781,1821,179317170
Chromosome 12AllAssembled moleculeUnlocalized scaffolds19,772,70419,584,067188,6371611714419,416,51519,270,206146,3096,111,5586,111,5588,8779959841116160
Chromosome 13AllAssembled moleculeUnlocalized scaffolds19,244,53919,135,657108,882107198819,086,65218,987,19199,46112,262,92812,262,9283,4471,3621,357518180
Chromosome 14AllAssembled moleculeUnlocalized scaffolds19,687,79819,532,596155,2022322420819,387,86919,234,261153,6085,667,1905,667,1906651,0121,009323230
Chromosome 15AllAssembled moleculeUnlocalized scaffolds17,721,04817,450,715270,3331312111017,346,21217,130,885215,3279,879,0539,879,0539,0569539292420200
Chromosome 16AllAssembled moleculeUnlocalized scaffolds15,059,97114,878,991180,9803113327814,921,11614,760,657160,45913,453,26413,453,264551816809732320
Chromosome 17AllAssembled moleculeUnlocalized scaffolds13,318,59513,065,498253,0973371732013,053,59312,856,620196,9736,860,7706,860,770768724720416160
Chromosome 18AllAssembled moleculeUnlocalized scaffolds372,383332,61539,76837532327,740291,26436,476265,122265,1221,64953512440
Chromosome 19AllAssembled moleculeUnlocalized scaffolds10,372,11310,292,96279,151166715910,122,52210,043,37179,15110,251,35610,251,3564766036030660
Chromosome 20AllAssembled moleculeUnlocalized scaffolds10,848,73010,730,484118,2461702414610,630,39610,512,150118,2462,482,5302,482,530878597597023230
Chromosome 21AllAssembled moleculeUnlocalized scaffolds9,945,4279,740,059205,368300102909,876,0549,672,751203,3035,543,3785,543,3786445895872990
Chromosome 22AllAssembled moleculeUnlocalized scaffolds14,497,15813,725,709771,4493502232814,051,02213,600,589450,4333,931,1533,931,15312,0438377617621210
Chromosome 23AllAssembled moleculeUnlocalized scaffolds6,720,4326,679,66040,772356296,650,5286,613,13737,3912,611,5262,611,5264,1974174152550
Chromosome 24AllAssembled moleculeUnlocalized scaffolds4,174,2434,088,88185,362726664,048,0393,973,02575,0141,217,3951,217,39542,86328827612550
Chromosome 25AllAssembled moleculeUnlocalized scaffolds5,815,7785,601,919213,8598412725,673,7045,553,554120,1501,675,1391,675,1399,2214314082311110
Chromosome 26AllAssembled moleculeUnlocalized scaffolds6,840,8076,432,859407,94817081626,480,1486,263,627216,5216,399,8886,399,88822,60643540431770
Chromosome 27AllAssembled moleculeUnlocalized scaffolds1,481,5261,412,92168,6054314291,334,8281,285,28649,542250,471250,4714,1621711611013130
Chromosome 28AllAssembled moleculeUnlocalized scaffolds5,060,0194,994,93965,080505454,994,3254,949,59444,7311,114,3812,518,0816,1033373352440
Chromosome 29AllAssembled moleculeUnlocalized scaffolds4,473,5464,328,165145,381125251004,249,7084,144,652105,056580,234580,23421,487439435424240
Chromosome 30AllAssembled moleculeUnlocalized scaffolds4,792,9084,611,874181,0349513824,506,6314,336,688169,943701,438701,43814,6115275131412120
Chromosome ZAllAssembled moleculeUnlocalized scaffolds69,509,21368,461,2661,047,9471,8641,39147364,712,69263,879,447833,245164,632167,1565,9507,6347,548861,3901,3900
Chromosome WAllAssembled moleculeUnlocalized scaffolds313,225260,62752,598261214250,748218,66232,08633,31933,3198,6733328511110
unplacedAssembled molecule132,372,869175,143116,218,1126784,7590
MoleculeTotal
Length
Mitochondrion MT16,719