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Items: 5

1.

De novo assembly of siRNA immunity in wild plants

(Submitter supplied) We describe an application of deep sequencing and de novo assembly of short RNA reads to investigate small interfering (si)RNAs mediated immunity in leaf samples from eight tree taxa naturally occurring in Wytham Woods, Oxfordshire, UK. BLAST search for homologues of contigs in the GenBank identified siRNA populations against a number of RNA viruses and a Ty1-copia retrotransposons in these tree species.
Organism:
Aesculus hippocastanum; Tilia platyphyllos; Betula pendula; Acer pseudoplatanus; Ulmus glabra; Fagus sylvatica; Fraxinus excelsior; Corylus avellana; Quercus robur
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10476 GPL10477
4 Samples
Download data: TXT
Series
Accession:
GSE22079
ID:
200022079

SRA Run Selector

2.

sRNA_s_6

Organism:
Corylus avellana; Acer pseudoplatanus; Fagus sylvatica; Ulmus glabra; Tilia platyphyllos
Source name:
pooled leaves from various tree species
Platform:
GPL10477
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548935
ID:
300548935

SRA Run Selector

3.

sRNA_s_5

Organism:
Corylus avellana; Tilia platyphyllos; Ulmus glabra; Acer pseudoplatanus; Fagus sylvatica
Source name:
pooled leaves from various tree species
Platform:
GPL10477
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548934
ID:
300548934

SRA Run Selector

4.

sRNA_s_4

Organism:
Fraxinus excelsior; Quercus robur; Aesculus hippocastanum; Acer pseudoplatanus; Fagus sylvatica; Betula pendula; Tilia platyphyllos
Source name:
pooled leaves from various tree species
Platform:
GPL10476
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548933
ID:
300548933

SRA Run Selector

5.

sRNA_s_3

Organism:
Fraxinus excelsior; Quercus robur; Betula pendula; Tilia platyphyllos; Acer pseudoplatanus; Aesculus hippocastanum; Fagus sylvatica
Source name:
pooled leaves from various tree species
Platform:
GPL10476
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548932
ID:
300548932

SRA Run Selector

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db=gds|term=(txid28930[Organism:exp])%20AND%20gds_sra[filter]|query=1|qty=10|blobid=MCID_6739fe454fec062fef74b319|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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