U.S. flag

An official website of the United States government

Format
Sort by

Send to:

Choose Destination

Search results

Items: 5

1.

De novo assembly of siRNA immunity in wild plants

(Submitter supplied) We describe an application of deep sequencing and de novo assembly of short RNA reads to investigate small interfering (si)RNAs mediated immunity in leaf samples from eight tree taxa naturally occurring in Wytham Woods, Oxfordshire, UK. BLAST search for homologues of contigs in the GenBank identified siRNA populations against a number of RNA viruses and a Ty1-copia retrotransposons in these tree species.
Organism:
Betula pendula; Acer pseudoplatanus; Ulmus glabra; Aesculus hippocastanum; Tilia platyphyllos; Fagus sylvatica; Fraxinus excelsior; Corylus avellana; Quercus robur
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL10476 GPL10477
4 Samples
Download data: TXT
Series
Accession:
GSE22079
ID:
200022079

SRA Run Selector

2.

sRNA_s_6

Organism:
Corylus avellana; Tilia platyphyllos; Acer pseudoplatanus; Fagus sylvatica; Ulmus glabra
Source name:
pooled leaves from various tree species
Platform:
GPL10477
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548935
ID:
300548935

SRA Run Selector

3.

sRNA_s_5

Organism:
Tilia platyphyllos; Ulmus glabra; Corylus avellana; Acer pseudoplatanus; Fagus sylvatica
Source name:
pooled leaves from various tree species
Platform:
GPL10477
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548934
ID:
300548934

SRA Run Selector

4.

sRNA_s_4

Organism:
Quercus robur; Aesculus hippocastanum; Betula pendula; Tilia platyphyllos; Fraxinus excelsior; Acer pseudoplatanus; Fagus sylvatica
Source name:
pooled leaves from various tree species
Platform:
GPL10476
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548933
ID:
300548933

SRA Run Selector

5.

sRNA_s_3

Organism:
Betula pendula; Tilia platyphyllos; Fagus sylvatica; Fraxinus excelsior; Quercus robur; Acer pseudoplatanus; Aesculus hippocastanum
Source name:
pooled leaves from various tree species
Platform:
GPL10476
Series:
GSE22079
Download data: TXT
Sample
Accession:
GSM548932
ID:
300548932

SRA Run Selector

Format
Sort by

Send to:

Choose Destination

Supplemental Content

Filters: Manage Filters

db=gds|term=(txid28930[Organism:exp])%20AND%20gds_sra[filter]|query=1|qty=10|blobid=MCID_667afbb09041cd510c875e9b|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Important Links

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > Genes & Expression > Gene Expression Omnibus (GEO) Datasets
Support Center