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Items: 17

1.

Transcriptome profiles with and without L-cysteine supplementation

(Submitter supplied) CyuR (b0447, also known as DecR or YbaO) is a recently characterized transcription regulator responsible for the generation of hydrogen sulfide (H2S) from L-cysteine (Cys), which decreases oxidative stress. Given that mitigation of oxidative stress is an important survival mechanism to achieve antibiotic resistance (AR) in many pathogenic bacteria such as Escherichia coli and Salmonella enterica, detailed studies about its effect and the regulatory network of CyuR are imperative. more...
Organism:
Escherichia coli W
Type:
Expression profiling by high throughput sequencing
Platform:
GPL32736
4 Samples
Download data: CSV
Series
Accession:
GSE215167
ID:
200215167
2.

Mechanism of tolerance improvement of Escherichia coli W against 3-hydroxypropionic acid by deletion of a less characterized transcription factor yieP (RNA-seq data seq)

(Submitter supplied) The mechanism of 3-HP tolerance related to YieP was elucidated. The genome-wide analysises were carried out to find out the genes reponsible for 3-HP tolerance.
Organism:
Escherichia coli W
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26392
8 Samples
Download data: TXT
Series
Accession:
GSE129317
ID:
200129317
3.

Quantifying variation within the bacterial species E. coli

(Submitter supplied) Escherichia coli strains are widely used in academic and applied research as well as in biotechnology for production of various compounds. Despite its status as a model organism, strain-specific differences and their underlying contributing factors are still not well characterized. These differences have a major impact on cell physiology and for the applied purposes of synthetic biology, metabolic engineering, and process design. more...
Organism:
Escherichia coli C; Escherichia coli str. K-12 substr. W3110; Escherichia coli str. K-12 substr. MG1655; Escherichia coli DH5[alpha]; Escherichia coli; Escherichia coli BL21; Escherichia coli W
Type:
Expression profiling by high throughput sequencing
7 related Platforms
14 Samples
Download data: CSV
Series
Accession:
GSE78756
ID:
200078756
4.

E. coli W grown in a minimal M9 medium supplemented with L-cysteine replicate 2

Organism:
Escherichia coli W
Source name:
ATCC 9637
Platform:
GPL32736
Series:
GSE215167
Download data
Sample
Accession:
GSM6625095
ID:
306625095
5.

E. coli W grown in a minimal M9 medium supplemented with L-cysteine replicate 1

Organism:
Escherichia coli W
Source name:
ATCC 9637
Platform:
GPL32736
Series:
GSE215167
Download data
Sample
Accession:
GSM6625094
ID:
306625094
6.

E. coli W grown in a minimal M9 medium replicate 2

Organism:
Escherichia coli W
Source name:
ATCC 9637
Platform:
GPL32736
Series:
GSE215167
Download data
Sample
Accession:
GSM6625093
ID:
306625093
7.

E. coli W grown in a minimal M9 medium replicate 1

Organism:
Escherichia coli W
Source name:
ATCC 9637
Platform:
GPL32736
Series:
GSE215167
Download data
Sample
Accession:
GSM6625092
ID:
306625092
8.

ecw_yiepko_w_3hp_2

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704471
ID:
303704471
9.

ecw_yiepko_wo_3hp_2

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704470
ID:
303704470
10.

ecw_wt_w_3hp_2

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704469
ID:
303704469
11.

ecw_wt_wo3hp_2

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704468
ID:
303704468
12.

ecw_yiepko_w_3hp_1

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704467
ID:
303704467
13.

ecw_yiepko_wo_3hp_1

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704466
ID:
303704466
14.

ecw_wt_w_3hp_1

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704465
ID:
303704465
15.

ecw_wt_wo3hp_1

Organism:
Escherichia coli W
Source name:
bacteria
Platform:
GPL26392
Series:
GSE129317 GSE133709
Download data: TXT
Sample
Accession:
GSM3704464
ID:
303704464
16.

W_anaero

Organism:
Escherichia coli W
Source name:
W_anaero
Platform:
GPL21531
Series:
GSE78756
Download data: CSV
Sample
Accession:
GSM2075725
ID:
302075725
17.

W_aero

Organism:
Escherichia coli W
Source name:
W_aero
Platform:
GPL21531
Series:
GSE78756
Download data: CSV
Sample
Accession:
GSM2075724
ID:
302075724

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