De novo assembly of siRNA immunity in wild plants - - GEO DataSets

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De novo assembly of siRNA immunity in wild plants

(Submitter supplied) We describe an application of deep sequencing and de novo assembly of short RNA reads to investigate small interfering (si)RNAs mediated immunity in leaf samples from eight tree taxa naturally occurring in Wytham Woods, Oxfordshire, UK. BLAST search for homologues of contigs in the GenBank identified siRNA populations against a number of RNA viruses and a Ty1-copia retrotransposons in these tree species.

Organism:: Aesculus hippocastanum; Tilia platyphyllos; Betula pendula; Acer pseudoplatanus; Ulmus glabra; Fagus sylvatica; Fraxinus excelsior; Corylus avellana; Quercus robur

Type:: Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL10477 GPL10476
4 Samples

Download data: TXT

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Accession:: GSE22079

ID:: 200022079

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De novo assembly of siRNA immunity in wild plants
De novo assembly of siRNA immunity in wild plants
Accession: GSE22079

GEO DataSets
GPL10476[RGSE] (1)
GEO DataSets
inducible nitrate reductase [NADH] 1 [Glycine max]
inducible nitrate reductase [NADH] 1 [Glycine max]
gi|351724693|ref|NP_001238090.1|

Protein
MAG: hypothetical protein A2480_00760 [Candidatus Uhrbacteria bacterium RIFOXYC2...
MAG: hypothetical protein A2480_00760 [Candidatus Uhrbacteria bacterium RIFOXYC2_FULL_47_19]
gi|1084210327|gb|OGM01660.1||gnl|WG G|A2480_00760

Protein

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