GEO DataSets

(Submitter supplied) The overall goal of this investigation was to investigate X-content of sex-biased genes in several nematode species. The following species of nematode were investigated: *C. elegans, *N2; *C. brenneri, *PB2801; *C. briggsae, *AF16; *C. remanei*, PB4641; *P. **pacificus, *PS312*.* Genomic DNA sequencing data was used to assign X and autosomal - linkage to unassembled sequencing contigs. Male and female RNA seq data was then generated and used to determine sex-biased expression. more...

Organism:

Caenorhabditis briggsae; Caenorhabditis brenneri; Caenorhabditis remanei; Caenorhabditis elegans; Pristionchus pacificus

Type:

Expression profiling by high throughput sequencing; Other

5 related Platforms

31 Samples

Download data: BEDGRAPH, FPKM_TRACKING

(Submitter supplied) mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition

Organism:

Caenorhabditis elegans; Caenorhabditis briggsae; Caenorhabditis brenneri; Caenorhabditis remanei

Type:

Expression profiling by high throughput sequencing; Other

4 related Platforms

48 Samples

Download data: TXT

(Submitter supplied) This project defines the transcriptomes of XO (male) and XX (female or mutant pseudo-female) Caenorhabditis nematodes. The data allow the overall composition and sexual regulation of the transcriptome within a single species to be determined. In addition, the five related species studied allow meta-comparisons between them. Because two of the five (C. elegans and C. briggsae) produce a self-fertile XX hermaphrodite, while the XX sex in the remaining three (C. more...

Organism:

Caenorhabditis brenneri; Caenorhabditis briggsae; Caenorhabditis elegans; Caenorhabditis remanei; Caenorhabditis japonica

Type:

Expression profiling by high throughput sequencing

9 related Platforms

30 Samples

Download data: TXT

(Submitter supplied) The nematode Caenorhabditis elegans contains each of the broad classes of eukaryotic small RNAs, including microRNAs (miRNAs), endogenous small-interfering RNAs (endo-siRNAs) and piwi-interacting RNAs (piRNAs). To better understand the evolution of these regulatory RNAs, we deep sequenced small RNAs from C. elegans and three closely related nematodes: C. briggsae, C. remanei and C. brenneri. The results reveal a fluid landscape of small RNA pathways with essentially no conservation of individual sequences aside from a subset of miRNAs. more...

Organism:

Caenorhabditis remanei; Caenorhabditis briggsae; Caenorhabditis elegans; Caenorhabditis brenneri

Type:

Non-coding RNA profiling by high throughput sequencing

4 related Platforms

12 Samples

Download data: TXT