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Items: 2

1.

Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.
Organism:
Solanum chilense; Solanum lycopersicum var. cerasiforme; Solanum peruvianum; Solanum pimpinellifolium; Solanum lycopersicum; Solanum habrochaites
Type:
Genome variation profiling by high throughput sequencing
6 related Platforms
50 Samples
Download data: VCF
Series
Accession:
GSE200034
ID:
200200034

2.

Dissection of the style’s response to pollination using transcriptome profiling in self-compatible (Solanum pimpinellifolium) and self-incompatible (Solanum chilense) tomato species

(Submitter supplied) Background: Tomato (Solanum lycopersicum) self-compatibility (SC) is defined as self-pollen tubes that can penetrate their own stigma, elongate in the style and fertilize their own ovules. Self-incompatibility (SI) is defined as self-pollen tubes that are prevented from developing in the style. To determine the influence of gene expression on style self-pollination, a transcriptome-wide comparative analysis of SC and SI tomato unpollinated/pollinated styles was performed using RNA-sequencing (RNA-seq) data. more...
Organism:
Solanum chilense; Solanum pimpinellifolium
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL20002 GPL20003
12 Samples
Download data: XLSX
Series
Accession:
GSE67654
ID:
200067654

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