GEO DataSets

(Submitter supplied) Clostridium perfringens is a Gram-positive anaerobic pathogen that causes multiple diseases in humans and animals. C. perfringens lack flagella but have type IV pili (TFP) and can glide on agar surfaces by forming filaments of cells aligned end to end. When cells are placed on agar surfaces, they become elongated, flexible and have TFP on their surface. To understand the basis of these phenotypes, cells were grown in three types of liquid media and on agar plates with the same medium to compare gene expression using RNA-seq. more...

Organism:

Clostridium perfringens

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL20676

12 Samples

Download data: XLSX

(Submitter supplied) RNA-seq was employed for comparative analysis of the transcriptomes of both the pathogen and the host in C. perfringens-infected murine muscle lesions. The aim was to identify C. perfringens genes that were induced in the host environment and host signaling cascades that were activated in response to a C. perfringens infection.

Organism:

Clostridium perfringens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL20676 GPL23210

9 Samples

Download data: CSV

(Submitter supplied) Purpose: Analyze gene expression of necrotic enteritis C. perfringens in intestinal chicken loops comparing with in vitro conditions

Organism:

Clostridium perfringens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20676

4 Samples

Download data: TXT

(Submitter supplied) Purpose: Analyze gene expression during C. perfringens colonization in the chicken Transcriptomic profile of mRNA from C. perfrinegns from in vivo and in vitro conditions were determined in biological duplicates by RNA-Seq using Illumina HiSeq 2500

Organism:

Clostridium perfringens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20676

4 Samples

Download data: TXT